3300008404: Human stool microbial communities from NIH, USA - visit 2, subject 764002286 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008404
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053235 | Ga0115185
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764002286 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130560240
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F067845	Metagenome	125	N
F076189	Metagenome	118	N
F089053	Metagenome	109	Y
F099451	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115185_100168	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	77129
Ga0115185_102100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10122
Ga0115185_102607	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	7741
Ga0115185_102698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7380
Ga0115185_103344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5808
Ga0115185_104394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	4270
Ga0115185_104673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3975
Ga0115185_108558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2084
Ga0115185_109634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1855
Ga0115185_122248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	779

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115185_100168	Ga0115185_10016829	F099451	MEIKNVGQLRKIIENISDDYEIEMRVRRELSDEELKGCRYPYPYDTEYLTLEFDDIGVSCKVLCLGVTSKTN*
Ga0115185_100879	Ga0115185_10087945	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0115185_102100	Ga0115185_10210014	F032286	VTPVRHRALVFDARLSAGNTANYTLVTGNTRSFCRLMCLCVKWRNVKPDSKHRSLPDSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRCFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHG*
Ga0115185_102607	Ga0115185_1026071	F051936	QGGTVQVLFFPLALRGKAFGFSVLQEHAVMTPIINIFFVTLIIRYLSIHISIKK*
Ga0115185_102698	Ga0115185_1026989	F076189	MRINHFKIMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISTCFDLRAIQSAQKLLHMLCNFHENTLGLLIFYTNYAII*
Ga0115185_103344	Ga0115185_1033441	F089053	MEGPRPDKFTFGVRIGRVVDGCRPAKGCIKKRIYGSANGQPELSAAEEVNVKNMEASL*
Ga0115185_104394	Ga0115185_1043941	F026592	QGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0115185_104673	Ga0115185_1046736	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNKFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0115185_108558	Ga0115185_1085582	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0115185_109634	Ga0115185_1096343	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWSVAAGHSRSADALPGKSNS*
Ga0115185_122248	Ga0115185_1222483	F056682	MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIH