3300008333: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008333
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053264 | Ga0115302
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 123636095
• Sequencing Scaffolds: 14
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F077405	Metagenome	117	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F097527	Metagenome	104	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115302_100002	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	329620
Ga0115302_100003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	232039
Ga0115302_100067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	83519
Ga0115302_100087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	69251
Ga0115302_100139	All Organisms → cellular organisms → Bacteria	52455
Ga0115302_100214	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	42209
Ga0115302_100344	All Organisms → cellular organisms → Bacteria	32153
Ga0115302_100602	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	21575
Ga0115302_101121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	13847
Ga0115302_101905	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	9603
Ga0115302_104615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	4775
Ga0115302_105299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	4240
Ga0115302_106777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3399
Ga0115302_113815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1685

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115302_100002	Ga0115302_100002193	F046433	MIELPTNPDALSELSPVVPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEIDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISGFEVDNDPESHEASVLVMAASGDYLDNGISAYSRYGGTIYPVEACYVLKNSSDAGGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGERIDDLSLPALANIVRPYRNGKNFDGLSRFRQLLEKE*
Ga0115302_100002	Ga0115302_100002272	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNILLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAIVLAIDITKLL*
Ga0115302_100003	Ga0115302_100003105	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGISNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYNPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0115302_100003	Ga0115302_100003133	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILLNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDVLNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE*
Ga0115302_100003	Ga0115302_100003141	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVVGQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRSVLSRYLNKM*
Ga0115302_100003	Ga0115302_100003182	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLTDLRKTPWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDAEHYDFEGVIEVDSYSLYDTLAEENGLNLFCFAAENILLNHGFFNNTDYQLYDVPEEYIDDQEVCMYMCLLNKDNIDFIDKNTYEDSVLYDIVRDRIFNAIYWSIRDSIEEDTRTRAR*
Ga0115302_100003	Ga0115302_10000325	F095629	MRELIICVCLLGCFGVVNANNVEQPKEVKIVHNDDSIILHKKIYQLEKRIERLEELLKKEGK*
Ga0115302_100003	Ga0115302_10000354	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG*
Ga0115302_100003	Ga0115302_10000373	F099453	MLRRKDMNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNMQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0115302_100003	Ga0115302_10000376	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFRRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLR*
Ga0115302_100003	Ga0115302_10000377	F081455	MEPLGKNSIKLMEKVLDNIILKSKKDIPPAEEIGAETVDIIDSAEEAIQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGKTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0115302_100067	Ga0115302_10006716	F103432	MKLIHSLFSLPLLFVLGGLFCTTACQDDVEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDGKTIFRRHTLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVAGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0115302_100087	Ga0115302_10008727	F073671	MNKQQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0115302_100087	Ga0115302_10008732	F067846	MESLQAQWERKTFDDYDRRCCAEDAYNEAVEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAVALGADYEEMRIKILTAMAEDRLEQLEEDYRKGFILND*
Ga0115302_100139	Ga0115302_10013914	F094007	MKSKTVEVLALARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDVNSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0115302_100214	Ga0115302_10021424	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVSPELGKAAIDIENTSKMDSADNGAVDFCNQALGGYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK*
Ga0115302_100344	Ga0115302_1003443	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKLKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFSGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYNRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0115302_100602	Ga0115302_1006023	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKRKK*
Ga0115302_101121	Ga0115302_10112112	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDIANNDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYKNGYILND*
Ga0115302_101121	Ga0115302_10112118	F073671	MNKQQAEHELAELHEKERSLEKALELVREKIRELINYTDKNKGNNNGAKF*
Ga0115302_101905	Ga0115302_1019053	F032313	MNFMSNCNWRAQSVSIESFKIVLMYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK*
Ga0115302_104615	Ga0115302_10461510	F054110	MNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0115302_105299	Ga0115302_1052995	F077405	GRALPTELFPRLLVAKQRGVFYGFISWCQIKFVKKFFD*
Ga0115302_106777	Ga0115302_1067772	F092230	MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPEGTYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRQLFASAIMVNLRVVELYKILTVCMILIAIAMTIGYFSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0115302_113815	Ga0115302_1138151	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSITPLF