3300008276: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008276
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053120 | Ga0114259
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118142399
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F080164	Metagenome	115	N
F081454	Metagenome	114	N
F089055	Metagenome	109	Y
F090516	Metagenome	108	N
F094006	Metagenome	106	Y
F097490	Metagenome	104	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114259_1000700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	14060
Ga0114259_1000919	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	11726
Ga0114259_1001463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	8404
Ga0114259_1001674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7698
Ga0114259_1004112	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3758
Ga0114259_1004495	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3492
Ga0114259_1006554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2561
Ga0114259_1007017	Not Available	2415
Ga0114259_1008672	Not Available	2015
Ga0114259_1008735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2002
Ga0114259_1010112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1761
Ga0114259_1010389	Not Available	1720
Ga0114259_1010411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1717
Ga0114259_1013561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1371
Ga0114259_1015055	Not Available	1252
Ga0114259_1016176	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1174
Ga0114259_1017611	Not Available	1093
Ga0114259_1019375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1012
Ga0114259_1019560	All Organisms → cellular organisms → Bacteria	1005
Ga0114259_1020018	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	986
Ga0114259_1030950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	699
Ga0114259_1036966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	610
Ga0114259_1037959	Not Available	598
Ga0114259_1040876	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114259_1000700	Ga0114259_10007008	F053092	MQSDQGLILCLTHTFLILGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0114259_1000919	Ga0114259_10009196	F094006	MRGALEPADPTGALYESVVSEEAHIGELQAGGISRRDLFALGWSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFGEELEYAFNFGA*
Ga0114259_1001463	Ga0114259_10014639	F077405	RPWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0114259_1001674	Ga0114259_10016745	F040149	VADEGAEELRGKVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114259_1004112	Ga0114259_10041123	F045567	MVTEDVVHTSTHRVKDALLPIDGDILTPRDGTHIVQAERVVVVLVSQENRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114259_1004495	Ga0114259_10044953	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMKYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPVDTYSADLFPYMRKQ
Ga0114259_1006554	Ga0114259_10065543	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLTIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0114259_1007017	Ga0114259_10070175	F103430	MEPITIKAFIGSNNKTKKLEVDKIISTVSINHEAFTLDYPVIGCWRGEVEETAVLYLSDERQKVMNTLNKLKEVLDQEAIAYQIENKLNLI*
Ga0114259_1008672	Ga0114259_10086722	F080164	MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0114259_1008735	Ga0114259_10087354	F089055	LELEATREELAAILSDAEQRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDYINNNPLKTVREIGDLLQSFRKGKAEESCR*
Ga0114259_1010112	Ga0114259_10101123	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVSPELGKTAFDVNNLKTNIPNNEAVDFCRQALGSYEKSLDHINNGPLETVQTIGISLQRL
Ga0114259_1010389	Ga0114259_10103892	F067846	MASFTAYDKEQEQYDAYERAVEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDCRKGYILND*
Ga0114259_1010411	Ga0114259_10104112	F103431	MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGSFGENIADCHAEDDNDKNAESQKEGFHVCIPEG*
Ga0114259_1013561	Ga0114259_10135611	F033081	TFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGIAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTLLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNVIALSLIAVVLAIDIAKLL*
Ga0114259_1015055	Ga0114259_10150552	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0114259_1016176	Ga0114259_10161761	F043990	MIKKHGIIFTFGVIILGIVVYADHKIERSWTEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIMLTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*
Ga0114259_1017611	Ga0114259_10176111	F077404	MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQKFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0114259_1019375	Ga0114259_10193752	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0114259_1019560	Ga0114259_10195601	F061925	EKKKTGKSKQTNIRNNPMSWEYSINLDSEESVSSVVTDLKICELLSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0114259_1020018	Ga0114259_10200182	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKYEFQPNSKYLIKYKTDMDGEYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMK
Ga0114259_1030950	Ga0114259_10309502	F061927	CSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0114259_1036966	Ga0114259_10369661	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELEKYK*
Ga0114259_1037959	Ga0114259_10379591	F077405	RPWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFNWLKIIQK*
Ga0114259_1040876	Ga0114259_10408761	F097490	KMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYIEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*