3300008269: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008269
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053081 | Ga0114154
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132346122
• Sequencing Scaffolds: 20
• Novel Protein Genes: 29
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114154_100082	All Organisms → cellular organisms → Bacteria	98501
Ga0114154_100129	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	77945
Ga0114154_100130	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	77748
Ga0114154_100225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	57628
Ga0114154_100284	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	50151
Ga0114154_101777	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	11816
Ga0114154_104949	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4613
Ga0114154_104978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	4579
Ga0114154_106872	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3336
Ga0114154_106939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3307
Ga0114154_107967	All Organisms → cellular organisms → Bacteria	2864
Ga0114154_109381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2389
Ga0114154_109533	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2348
Ga0114154_109750	All Organisms → cellular organisms → Bacteria	2291
Ga0114154_111864	Not Available	1845
Ga0114154_114366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1486
Ga0114154_115143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1396
Ga0114154_118808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1085
Ga0114154_121807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	911
Ga0114154_128133	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	683

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114154_100082	Ga0114154_10008247	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLSELKKVLDQEAIAYQIENDLQLI*
Ga0114154_100082	Ga0114154_10008280	F076191	MKITAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNEAGKDYGAVMYFTGKAAEQHIEENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPNNHYGFLRDAGY*
Ga0114154_100082	Ga0114154_10008285	F084362	MNCTFTVRWSDEKNEPHAKTYATEDSAKRAKKWLLEHGVRSVDIAVKINNKPAGSLEDGDKPSETEAEQKGFWWEK*
Ga0114154_100129	Ga0114154_10012932	F081455	VIDLDDLSPIYYSIVLFKAKEKHIMETMKNLLEMENVECISNLISKCSDYINRKERNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVIDGKTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0114154_100129	Ga0114154_10012933	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLR*
Ga0114154_100129	Ga0114154_10012936	F099453	MNRFDVIELAQQTLTFVYNTFNGKINTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLGNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYIVEYLEYGNSKLVIKITQGA*
Ga0114154_100129	Ga0114154_10012954	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDSLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVRDIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGKFIYGTKEYKILKELRSSPLMVVLTQLTRKNDSGYILNSNLELVKG*
Ga0114154_100129	Ga0114154_10012977	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVISVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0114154_100130	Ga0114154_10013016	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIIDLDDVSLLTDLRKTDWYEDWFTDDCKNADLIDLSRFNFNSLARFEKEEYLRNVERYDFEAVTPVDSYGLFDTLTKDNDVELFKLAAENILINHGFFNKTDYNFCDIPNEYMGDKEVSVYMCLLNIENMIFVDKKTLDTTILYNIVKDHICGFIYFTLFDRLNKDTRTRAR*
Ga0114154_100130	Ga0114154_10013082	F095629	MIFKERMMRELIICAVLIGCFSVANANNVEQPKEVKIVHNDDSVVLHKKIYQLEKRIERLEELLKKEGK*
Ga0114154_100225	Ga0114154_10022556	F067846	MESLQAQWERKTFNDYDRQYTKEDDYNRAIEMEIEAIKENIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND*
Ga0114154_100284	Ga0114154_10028414	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKELMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE*
Ga0114154_100284	Ga0114154_10028421	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRDTLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVVGQIKHTASSKEGRALSIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRTVLSRYLNKM*
Ga0114154_101777	Ga0114154_1017774	F043235	VDEFGTQLTDALLDRPDRSKRELHQGAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114154_104949	Ga0114154_1049494	F084342	LGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0114154_104978	Ga0114154_1049784	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRQCGRHYKEYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKEYRSFILKVLPGKKDEW*
Ga0114154_106872	Ga0114154_1068724	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGNILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDMTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0114154_106939	Ga0114154_1069396	F099454	MALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGL
Ga0114154_107967	Ga0114154_1079673	F080164	MVGLTLCAAPQVTLRERASAFPLITEKAPSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0114154_107967	Ga0114154_1079674	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY*
Ga0114154_109381	Ga0114154_1093812	F046433	MIELLTSPGALSELSPVAPPKLLSQARDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0114154_109533	Ga0114154_1095333	F053092	MQSDQGLILCLTHVLLVLRALILEPAEMEDPMDDHTVQLFGILIAKEFGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114154_109750	Ga0114154_1097501	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEWSLLP
Ga0114154_111864	Ga0114154_1118643	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSLQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0114154_114366	Ga0114154_1143661	F090517	LGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0114154_115143	Ga0114154_1151432	F046431	MKIFKKITILSILIIIMLTYIQTLVFAVESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDFSADAIDEEVKVLNIYPDNESVNRTLWTTNEFNIPTVHVRYNDGEEKNILKSALLKVWMEGRYYNRR*
Ga0114154_118808	Ga0114154_1188082	F046431	MKNRIRKSIKLITIFCILLSVIIAYSNVLVSWAAADSELTITPKPETNNMHLKWTGPLNSTYRVFQKKPGSNHFETIGLTDFSPEAINEEVKVLNIYPTADNNNTALSASGMTIPNVTVTYLDGQTETIPKSALLKAWMEGRNSK*
Ga0114154_121807	Ga0114154_1218071	F046431	NCIKERKQMKILKKITIVSILLIIMLTYIQTLVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFSPEAIEEEVKVLNVYPHSKNESQSAYPGSHAFQTLPNVNVTYLDGSTETIEKPALLKVWMEGRNSK*
Ga0114154_128133	Ga0114154_1281332	F046432	MQMTENELSEVISKFQMPEGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIPSDAEDEISKYL