3300008147: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053171 | Ga0114367
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130104672
• Sequencing Scaffolds: 22
• Novel Protein Genes: 26
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F067846	Metagenome	125	Y
F071327	Metagenome	122	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F089056	Metagenome	109	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F103436	Metagenome	101	Y
F105376	Metagenome	100	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114367_100002	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	342074
Ga0114367_100021	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	144879
Ga0114367_100031	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	120973
Ga0114367_100047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	104398
Ga0114367_100269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	36810
Ga0114367_100333	All Organisms → cellular organisms → Bacteria	32687
Ga0114367_101939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	10060
Ga0114367_105596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4034
Ga0114367_106562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3470
Ga0114367_107288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3119
Ga0114367_107967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2856
Ga0114367_108130	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2799
Ga0114367_111059	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2026
Ga0114367_113561	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1630
Ga0114367_113725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1611
Ga0114367_114889	All Organisms → Viruses → Predicted Viral	1474
Ga0114367_115963	Not Available	1371
Ga0114367_116644	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1312
Ga0114367_116986	Not Available	1287
Ga0114367_127062	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	803
Ga0114367_130210	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	718
Ga0114367_135786	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	609

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114367_100002	Ga0114367_100002169	F043235	MDEVVASDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYYRSHGFKGGRSMTSNVLLPGSAH*
Ga0114367_100002	Ga0114367_100002233	F098763	MDRRASLRILSPALYLATKFFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0114367_100002	Ga0114367_100002244	F047508	MLGHRLVEGRVKYPYLRDLGEHLRHGFDTEDVGWVVKRSELGALMEHIYYLWGDTYALSKALCTVYKAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKELYYMVRCELILSSP*
Ga0114367_100021	Ga0114367_10002194	F080164	MVGLTLSAAPQVTLRERANAFPLITEKDPSEIYAPYAWRLPVVPLRLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0114367_100031	Ga0114367_10003153	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVTRALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDYLQTPREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0114367_100031	Ga0114367_10003154	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP*
Ga0114367_100047	Ga0114367_1000472	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMDLGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIITIDCEDTRSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYERESTYFTALWPVPDYKYNEMEW*
Ga0114367_100269	Ga0114367_10026916	F085820	MYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0114367_100333	Ga0114367_10033346	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0114367_101939	Ga0114367_10193912	F067846	MSIIAEWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILNY*
Ga0114367_101939	Ga0114367_1019397	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTNKNKGQK*
Ga0114367_105596	Ga0114367_1055963	F103436	MITTSKDGWCSKSDAEILNSLKDLVSSCDVDFKREALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIQILKVRKHEFFNE*
Ga0114367_106562	Ga0114367_1065622	F063777	LIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLIKEDYLPDENSQEYKIFNDFCVKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDSQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNKEQIEIAILE*
Ga0114367_107288	Ga0114367_1072882	F033081	MHTDMHTDITVVYRPKKGVIAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFCVVAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGGVFLMGDFTNYTPSQKFLHKIKATRCEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSATGFGFLLVYLWYYRKYRNQIIATAAAATVHALYNAIALSLITVVVAVYLAIDIAKLL*
Ga0114367_107967	Ga0114367_1079675	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC*
Ga0114367_108130	Ga0114367_1081303	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILACAGMITYVYMFLKNNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0114367_111059	Ga0114367_1110593	F078842	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKSLSLSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDIYEVNS*
Ga0114367_113561	Ga0114367_1135612	F047127	MKKTFAFILLSIISLVKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0114367_113725	Ga0114367_1137253	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAEEFGKKGVYE*
Ga0114367_114889	Ga0114367_1148891	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRRKDEKFICLTNIWPDGSSHEESYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKRCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK*
Ga0114367_115963	Ga0114367_1159632	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKELNNHYVFDDSIDKKNKVITLKIVGDNVKNQDIKNLEKKLALQVHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0114367_116644	Ga0114367_1166442	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEFHVNEYFSYFSSYKIFISERIILLWQSRAPPVLS*
Ga0114367_116986	Ga0114367_1169862	F061925	MSWEYSINLDSEEAVNSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSVTLEHIFRSVI*
Ga0114367_127062	Ga0114367_1270621	F095633	MGNYEKSTEAWRREGLTEGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
Ga0114367_130210	Ga0114367_1302101	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKE
Ga0114367_135786	Ga0114367_1357861	F089056	MVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEVIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*