3300008131: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008131
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052951 | Ga0111081
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104525727
• Sequencing Scaffolds: 25
• Novel Protein Genes: 30
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F090517	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F101358	Metagenome	102	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111081_100003	All Organisms → cellular organisms → Bacteria	167202
Ga0111081_100079	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43860
Ga0111081_100282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	23058
Ga0111081_100315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	21723
Ga0111081_101011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11796
Ga0111081_101159	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10873
Ga0111081_101378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9790
Ga0111081_101654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	8671
Ga0111081_101714	All Organisms → cellular organisms → Bacteria	8491
Ga0111081_101844	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8134
Ga0111081_101902	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	7955
Ga0111081_102359	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6875
Ga0111081_102762	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	6237
Ga0111081_102922	All Organisms → cellular organisms → Bacteria	5999
Ga0111081_103536	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5245
Ga0111081_104574	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4290
Ga0111081_105011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	3979
Ga0111081_105581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3661
Ga0111081_105882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	3509
Ga0111081_108663	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2508
Ga0111081_111611	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1898
Ga0111081_113802	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1597
Ga0111081_121796	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	979
Ga0111081_125121	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	842
Ga0111081_138734	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111081_100003	Ga0111081_100003115	F101358	MTEKYSASLSPRQEHLLTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDKGWIDIEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPATDTTCDYQQPRATNRDTARPKRRYV*
Ga0111081_100079	Ga0111081_10007938	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTEEIKDLENIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0111081_100079	Ga0111081_10007939	F036281	MFSIIRVSEGPVDIYELRMRYLAKLKETDGVMLPTFIYRNKSLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYDAQEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSSDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNAKGHQSYDWVLENVEWAADTIRYF*
Ga0111081_100079	Ga0111081_10007940	F027205	VASRLIVSADDILKAVKDSEEFEKKALSEARKRDRAEGKPPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPKRIRK*
Ga0111081_100079	Ga0111081_10007943	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEEVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFTGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0111081_100079	Ga0111081_10007946	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0111081_100282	Ga0111081_1002828	F059076	MTNRILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE*
Ga0111081_100315	Ga0111081_10031511	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGVYSPEFSEVSGFSSLLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG*
Ga0111081_101011	Ga0111081_10101112	F047127	IIFMKKTFAFILLSIIPLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNRK*
Ga0111081_101159	Ga0111081_10115912	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPEIVYGDILFAEGVRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA*
Ga0111081_101159	Ga0111081_10115918	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPRDGKILCFSWFDWDAHMFMHDGINELVFAPKLNSKSPQSLWNKKEVK*
Ga0111081_101378	Ga0111081_10137813	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDDGTEVSFYKGRNLIYSDILFSGGIRTTLFKCRQKKNLTRFISRVLELAQGESSNIHPDFRA*
Ga0111081_101654	Ga0111081_1016549	F090516	KKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYGDISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMLEIMKLARILDLPLKAYFK*
Ga0111081_101714	Ga0111081_1017148	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWENPKSIDDIPYDARFYTDNKKTIYIAINSFSKNIFSALKSILAKHDYHLNDCDTDEEVTLEHIFHSVI*
Ga0111081_101844	Ga0111081_1018446	F043235	MDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH*
Ga0111081_101902	Ga0111081_1019022	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTNEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSKLYNHLNLEK*
Ga0111081_102359	Ga0111081_1023593	F040149	VADEGAKELRWEVLIEEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP*
Ga0111081_102762	Ga0111081_1027626	F041827	KHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRSYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0111081_102922	Ga0111081_1029227	F030786	MKRTRIHKIVFQMLVVMIVTSSLQLLLENGSATKGGNAMGTKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0111081_103536	Ga0111081_1035362	F090517	MNRRIFSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTWESKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0111081_104574	Ga0111081_1045742	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYASCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0111081_105011	Ga0111081_1050112	F094006	MWSALEPAGPTGALYEPAVCVEAHIGYLQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0111081_105581	Ga0111081_1055813	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILINPRNLIK*
Ga0111081_105882	Ga0111081_1058822	F092231	MSRPTPQDFIAWSNTLVQFPWPIQLNDFTPYAERLGWKPGPRPSRFSVSDDEYVTLGDDRSGNVHNLFLYMASNEAEDDEGAAEMNDHFVSCVAAGRKAWGDPFLLEGGDGPGVTWRFPGDMFAQVTGGFTAVLFNFFTPEGRRQFL*
Ga0111081_108663	Ga0111081_1086632	F103434	VSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*
Ga0111081_111611	Ga0111081_1116112	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIWFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0111081_113802	Ga0111081_1138022	F101360	VSKEDALRRAVIAAHVAKAASQEKKKALKALEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAATSLGGFIKQTGEIPDGVELVTPSPRISARVSPAQEEAIQELIATGDISLIDIEAPE*
Ga0111081_121796	Ga0111081_1217961	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQSLQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRFILK*
Ga0111081_125121	Ga0111081_1251211	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRIIFG*
Ga0111081_138734	Ga0111081_1387341	F064819	VILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINNIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKY