3300008127: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765337473 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008127
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053179 | Ga0114846
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765337473 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50934335
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F077404	Metagenome	117	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114846_100014	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44142
Ga0114846_100263	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	15695
Ga0114846_101247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5089
Ga0114846_101356	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4727
Ga0114846_102176	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3080
Ga0114846_102248	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2989
Ga0114846_103245	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2184
Ga0114846_103518	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2050
Ga0114846_117997	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	601
Ga0114846_119647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114846_100014	Ga0114846_10001433	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLHHEEVK*
Ga0114846_100263	Ga0114846_1002635	F077404	MNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYADTILLHQRFNVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFESYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFRFNRIR*
Ga0114846_101247	Ga0114846_1012476	F103434	VVEVTLAVVKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK*
Ga0114846_101356	Ga0114846_1013563	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFRAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPFQRIGGLRDLLMTPDVSETDYLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0114846_101356	Ga0114846_1013564	F040149	VADEGAEELRGEMLIEEQGIPVLFVEVVAWYDGRVSSSEMLRSVGIALEREPRLAPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0114846_102176	Ga0114846_1021764	F098763	MDRRASLRVLSTALYLATKLFEAVVWTMISYDPSDEVEGKGGMNAIPTAVDE*
Ga0114846_102248	Ga0114846_1022482	F099454	MKASKLLWAVVMPLTFVLTSCDRLTDEPTLEDRGYKYFDSTAQQKSFRVVTASGKPYNHKIDWHIIGILDSKSDTYLTKKVDTLSNGDLRISYDWVAFTVRENKSVIDVEVQKNETGQDRSVKFVAKDDHKGLASPSMKVIQQAK*
Ga0114846_102248	Ga0114846_1022483	F099454	MKASKLLWAVVVALTFVLTSCDRVTDEPTIEGKINKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSENYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0114846_103245	Ga0114846_1032453	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQAERVVVVLVSQENSIDTIDTETCGLVVEVRATVDEDTLPTLGDYEGRGAQTTVTSIRAMANWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERECVVERVVR*
Ga0114846_103518	Ga0114846_1035183	F053092	MQSDQGLILCLTHALLVLRALILEPAEMEDPMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0114846_117997	Ga0114846_1179971	F077781	PPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGDLSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPGTLEISPLRAAT*
Ga0114846_119647	Ga0114846_1196471	F084342	SLGVAGSEGAAKLFLLGGYLAIPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*