3300008090: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008090
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053148 | Ga0114309
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134881877
• Sequencing Scaffolds: 27
• Novel Protein Genes: 30
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114309_100020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	147695
Ga0114309_100135	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58004
Ga0114309_100205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	44321
Ga0114309_100283	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	36138
Ga0114309_100579	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	21801
Ga0114309_100583	All Organisms → cellular organisms → Bacteria	21731
Ga0114309_100633	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20414
Ga0114309_100691	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19125
Ga0114309_101026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	14246
Ga0114309_101253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	12374
Ga0114309_101275	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	12260
Ga0114309_102438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7693
Ga0114309_103442	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5876
Ga0114309_104279	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	4922
Ga0114309_105392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4048
Ga0114309_105775	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3823
Ga0114309_108621	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2640
Ga0114309_112685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1841
Ga0114309_121188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1134
Ga0114309_123780	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1014
Ga0114309_124602	Not Available	985
Ga0114309_128235	Not Available	873
Ga0114309_130706	Not Available	807
Ga0114309_134276	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	731
Ga0114309_135133	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	715
Ga0114309_142889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	596
Ga0114309_145202	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114309_100020	Ga0114309_10002016	F103431	MIDLDVLIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0114309_100135	Ga0114309_10013538	F081510	MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0114309_100205	Ga0114309_10020515	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMEYCAKELIDELVFLGMSELHFAATALAKRLRHHLEVDNNPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKG*
Ga0114309_100283	Ga0114309_10028310	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKSMHVYGVQKDGSRQAVDEHVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL*
Ga0114309_100283	Ga0114309_10028311	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPARAAWLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVTMEGKTVFRRHTLPSVSAYSLHVVAVGDTIYRQKESDAEFNADLDALFHESIGVAPRLFGVKELSVVGIDRKGKPRDLGNYSCPLLLGKRRNVNYRTREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0114309_100579	Ga0114309_1005791	F078842	MMISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILFAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAANECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGRDFLEYVKSLSSYVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCIIGGKGWLKMADSARIKQMINSIELDIYEVNS*
Ga0114309_100583	Ga0114309_10058310	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIINVVNYLLLSAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0114309_100633	Ga0114309_10063339	F081510	MKFNLNAVKATAKTTWVTTKILGKKYAPVILLGAGLIGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDDKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN*
Ga0114309_100691	Ga0114309_1006919	F018385	MMAEYENQWGPYKEHSIEKDRDPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0114309_101026	Ga0114309_1010268	F089055	LKVEKMSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAFDVANIPNNEAVYLCNQTLGSYGKSLDRINKNPLEVVQTIGTSLQHLRDEYKTEESCR*
Ga0114309_101253	Ga0114309_1012533	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELSIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114309_101275	Ga0114309_1012754	F084342	LGGYLALLILRPFFAKAPKETLGQERGLGDAYDKDYQNEKALQWIHRCHILGICKKE*
Ga0114309_102438	Ga0114309_1024381	F036281	KETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKGHWYTFRMSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0114309_103442	Ga0114309_1034424	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEAGTTWRRYPLETLQKEGYILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVACLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0114309_103442	Ga0114309_1034425	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHNSEDAIDYFVYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114309_104279	Ga0114309_1042792	F085820	MLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSDKGKK*
Ga0114309_105392	Ga0114309_1053924	F103436	MITTSKDGWCAQSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGGGRYVEAVHLLEENKVFLEKSDWPYYALGIQILRARKHEFFNE*
Ga0114309_105775	Ga0114309_1057751	F045567	MVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114309_108621	Ga0114309_1086212	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATTTAWTVGVAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0114309_112685	Ga0114309_1126852	F089055	LKVEKMSSTPECVTNTPELDAARGELAAILSNAEQRDDNSKVSPELGKTAIDIENTNSTDNGAVDLCNQALGNYEKSLDRINNSPLKTVQAIGNSLQRLREYKTKEICE*
Ga0114309_121188	Ga0114309_1211881	F092230	MRQAHKRMVNKMKAHLLKVFLPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTATGEVQNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGFYCKLRRKE
Ga0114309_123780	Ga0114309_1237801	F099453	AGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYSFMVCENRTYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0114309_124602	Ga0114309_1246021	F032313	CDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILLHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0114309_128235	Ga0114309_1282352	F077405	LLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*
Ga0114309_130706	Ga0114309_1307062	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNVFNLYKEIVNLDDVSLLAELRHTEWYKDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFNTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDN
Ga0114309_134276	Ga0114309_1342761	F080166	VNILANFDNYNKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGVNKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR*
Ga0114309_135133	Ga0114309_1351332	F046432	MWEMTENELSEVISKYQMPEGRYSVAQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEMKS*
Ga0114309_140273	Ga0114309_1402731	F103435	VFCTEPIYQYYRSYLYADDKDKLDKQLMVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYISQLISKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*
Ga0114309_142889	Ga0114309_1428892	F103436	MVTSKDGFCDKSDAEILESLKAWVMKCDVKYVKSDALKKIDSAFALWANAQYVSALRLLDENEVFLKKSDWPYYALGIQILKVRKHEFLNE*
Ga0114309_145202	Ga0114309_1452021	F018385	MMAEYVSQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*