3300008079: Human stool microbial communities from NIH, USA - visit 1, subject 160582958 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008079
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052886 | Ga0105956
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160582958 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120264565
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F068941	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F073574	Metagenome	120	N
F076190	Metagenome	118	Y
F089005	Metagenome	109	N
F089054	Metagenome	109	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105956_100176	Not Available	84851
Ga0105956_100579	Not Available	33034
Ga0105956_103107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	5236
Ga0105956_106309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2434
Ga0105956_107557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2027
Ga0105956_109497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1597
Ga0105956_111568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1302
Ga0105956_115924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	931
Ga0105956_117162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	862
Ga0105956_117624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	840
Ga0105956_126039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	557

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105956_100176	Ga0105956_10017694	F089054	MLTKGKFPVSFEVPGHTKDYPEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLMLREILQINLSDITIIDIIPLP*
Ga0105956_100579	Ga0105956_10057912	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVKAIALN*
Ga0105956_103107	Ga0105956_1031076	F051936	ALRGKAFGFSVLQEHAVMTPVISIFFAILIIRYLSIHISIKK*
Ga0105956_106309	Ga0105956_1063094	F076190	GSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLCPYFQREPL*
Ga0105956_107557	Ga0105956_1075573	F068941	MDNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMDVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
Ga0105956_109497	Ga0105956_1094972	F070133	MKRLLGLLLAMMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQ
Ga0105956_111568	Ga0105956_1115681	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQAVIGAVLFSKRET
Ga0105956_115924	Ga0105956_1159243	F051936	FPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*
Ga0105956_117162	Ga0105956_1171622	F072366	MAVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN*
Ga0105956_117624	Ga0105956_1176241	F089005	LTKSKQRSIIALALLRLATSNEGSKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHHELRI*
Ga0105956_126039	Ga0105956_1260391	F073574	RCAIVLNGSEELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGNFAAD*