3300008066: Freshwater microbial communities from catchments in Singapore - Site BH

Overview

Basic Information

• IMG/M Taxon OID: 3300008066
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118189 | Gp0131421 | Ga0110927
• Sample Name: Freshwater microbial communities from catchments in Singapore - Site BH
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108399707
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Catchments In Singapore
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Catchments In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → drainage basin → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003081	Metagenome / Metatranscriptome	508	Y
F020860	Metagenome / Metatranscriptome	221	N
F025679	Metagenome / Metatranscriptome	200	Y
F029434	Metagenome / Metatranscriptome	188	Y
F039134	Metagenome / Metatranscriptome	164	N
F067528	Metagenome / Metatranscriptome	125	Y
F080911	Metagenome / Metatranscriptome	114	Y
F100449	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110927_1004208	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	607
Ga0110927_1008306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1300
Ga0110927_1042022	Not Available	691
Ga0110927_1044187	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	586
Ga0110927_1107856	Not Available	804
Ga0110927_1119701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1398
Ga0110927_1151058	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	620
Ga0110927_1242046	Not Available	555

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110927_1004208	Ga0110927_10042082	F080911	MPNSHQSDFKRNLRREIAGYFIVVLCALPIRFWIMATLMDQEGRWAFLASRVFGYLSVGLITAVAVSKLRLRTKLILTFLLVAL*
Ga0110927_1008306	Ga0110927_10083061	F067528	FFELAQSGGSEQNSVSIALKPLYEGTFFKLWSGGDREKVNQINSLSAAVERLKI*
Ga0110927_1042022	Ga0110927_10420223	F025679	MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDIIDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTTYYTDMITSWINKNWQVELIKNNI*
Ga0110927_1044187	Ga0110927_10441872	F039134	MFDHLIHIHQQFKQRIIGIELQRFKNVVTKPGALRYEIEAYNEYLLLTNAFALPIGTRIISDTNSLEILSSQNGLEGLEEFSGLVAIELPANTQEYPNIEFIQIVKE*
Ga0110927_1107856	Ga0110927_11078562	F020860	MNITKAKTLAEGGYALYSIDPKTKTETQVGYMGENLDPKGWLPEGVKIENS*
Ga0110927_1119701	Ga0110927_11197013	F039134	MFDHLNHIHQQYKQRELGIQLQSFKTVVTKAPKLRYEIEAYNEYLLLTNVSVLPIGTRIISDTNSLEITTAQNALEGLEEFSGLIAIELPEKVDTYPIIEFIQIVKE*
Ga0110927_1121107	Ga0110927_11211072	F100449	MLCQLVCVDRRYQRMNCFNIREIQSILKRKFFTDLINTHDHRLLLNKTAMGLRFKTNNINSMHSNMFVFYNYGIEFASKIRSTNYFFNDK
Ga0110927_1151058	Ga0110927_11510581	F003081	MFNDTRFGAEVFYMHVRGVDTIFVLSYIHILKKIYFKNYITAESDG*
Ga0110927_1242046	Ga0110927_12420462	F029434	LDKKYTFGVWLDIDAEDEEQALRLFDNVIKNSFVKDSYCFEWKEVE*