Metagenome / Metatranscriptome Family F080911

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080911
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	83 residues
Representative Sequence	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKLSLRTRLILTFLIVAL
Number of Associated Samples	86
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (17.544 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (73.684 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.50% β-sheet: 0.00% Coil/Unstructured: 37.50%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13472	Lipase_GDSL_2	22.81
PF00884	Sulfatase	21.05
PF14100	DUF6807	2.63
PF13470	PIN_3	1.75
PF03950	tRNA-synt_1c_C	1.75
PF04230	PS_pyruv_trans	0.88
PF00873	ACR_tran	0.88
PF07635	PSCyt1	0.88
PF02899	Phage_int_SAM_1	0.88
PF12728	HTH_17	0.88
PF00589	Phage_integrase	0.88
PF00749	tRNA-synt_1c	0.88
PF16576	HlyD_D23	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.63
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.88
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	85.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	83.33 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	69.30 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	3.51 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	69.30 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.51 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	69.30 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	3.51 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	69.30 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	0.88 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000268\|M3P_10018670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2488	Open in IMG/M
3300000736\|JGI12547J11936_1005346	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3494	Open in IMG/M
3300000756\|JGI12421J11937_10038764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1641	Open in IMG/M
3300000756\|JGI12421J11937_10046303	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1442	Open in IMG/M
3300000756\|JGI12421J11937_10106606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	755	Open in IMG/M
3300000756\|JGI12421J11937_10119452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	690	Open in IMG/M
3300002136\|M2t6FKB1_1205274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1258	Open in IMG/M
3300002137\|M2t6BS1_1065064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	715	Open in IMG/M
3300002386\|B570J29613_1006621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	754	Open in IMG/M
3300002447\|JGI24768J34885_10226834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	628	Open in IMG/M
3300002835\|B570J40625_101409789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	575	Open in IMG/M
3300002835\|B570J40625_101721320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	509	Open in IMG/M
3300003277\|JGI25908J49247_10033847	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300003277\|JGI25908J49247_10037671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1326	Open in IMG/M
3300003394\|JGI25907J50239_1006105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2892	Open in IMG/M
3300003404\|JGI25920J50251_10141606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	527	Open in IMG/M
3300003431\|JGI25913J50563_1062432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	565	Open in IMG/M
3300003497\|JGI25925J51416_10074106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	850	Open in IMG/M
3300004112\|Ga0065166_10337318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	621	Open in IMG/M
3300004788\|Ga0007742_11094369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1327	Open in IMG/M
3300004793\|Ga0007760_11350913	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005580\|Ga0049083_10292313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	545	Open in IMG/M
3300005584\|Ga0049082_10065920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1271	Open in IMG/M
3300005585\|Ga0049084_10196214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	690	Open in IMG/M
3300005585\|Ga0049084_10222513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	639	Open in IMG/M
3300005662\|Ga0078894_10237159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1653	Open in IMG/M
3300005662\|Ga0078894_11238607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	630	Open in IMG/M
3300005758\|Ga0078117_1010393	All Organisms → cellular organisms → Bacteria	2802	Open in IMG/M
3300007546\|Ga0102874_1091031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	966	Open in IMG/M
3300007649\|Ga0102912_1024464	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300007708\|Ga0102859_1199416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	595	Open in IMG/M
3300007862\|Ga0105737_1160649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	586	Open in IMG/M
3300007973\|Ga0105746_1139791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	812	Open in IMG/M
3300008055\|Ga0108970_10108550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	944	Open in IMG/M
3300008055\|Ga0108970_10496429	All Organisms → cellular organisms → Bacteria	2880	Open in IMG/M
3300008066\|Ga0110927_1004208	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	607	Open in IMG/M
3300008114\|Ga0114347_1261491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	522	Open in IMG/M
3300008117\|Ga0114351_1024025	All Organisms → cellular organisms → Bacteria	4054	Open in IMG/M
3300008119\|Ga0114354_1155707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	844	Open in IMG/M
3300009058\|Ga0102854_1017115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2095	Open in IMG/M
3300009152\|Ga0114980_10275730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	979	Open in IMG/M
3300009152\|Ga0114980_10515947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	680	Open in IMG/M
3300009159\|Ga0114978_10762976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	547	Open in IMG/M
3300009419\|Ga0114982_1013810	All Organisms → cellular organisms → Bacteria	2794	Open in IMG/M
3300009419\|Ga0114982_1170010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	674	Open in IMG/M
3300009419\|Ga0114982_1226214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	581	Open in IMG/M
3300009419\|Ga0114982_1267520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	534	Open in IMG/M
3300010312\|Ga0102883_1068358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1044	Open in IMG/M
3300010354\|Ga0129333_11026296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	692	Open in IMG/M
3300010388\|Ga0136551_1010015	All Organisms → cellular organisms → Bacteria	1984	Open in IMG/M
3300011009\|Ga0129318_10036894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1196	Open in IMG/M
3300012665\|Ga0157210_1001272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	7998	Open in IMG/M
3300012667\|Ga0157208_10000443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	12163	Open in IMG/M
3300020141\|Ga0211732_1287569	All Organisms → cellular organisms → Bacteria	1941	Open in IMG/M
3300020141\|Ga0211732_1335201	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1226	Open in IMG/M
3300020141\|Ga0211732_1447069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	503	Open in IMG/M
3300020151\|Ga0211736_10339988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	8301	Open in IMG/M
3300020151\|Ga0211736_10539215	All Organisms → cellular organisms → Bacteria → PVC group	978	Open in IMG/M
3300020159\|Ga0211734_10845440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	721	Open in IMG/M
3300020159\|Ga0211734_11163859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	608	Open in IMG/M
3300020160\|Ga0211733_10146390	All Organisms → cellular organisms → Bacteria → PVC group	1566	Open in IMG/M
3300020161\|Ga0211726_10434024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	549	Open in IMG/M
3300020205\|Ga0211731_11399697	All Organisms → cellular organisms → Bacteria → PVC group	1698	Open in IMG/M
3300020524\|Ga0208858_1028133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	819	Open in IMG/M
3300020532\|Ga0208601_1044453	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	627	Open in IMG/M
3300020554\|Ga0208599_1037145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	733	Open in IMG/M
3300020572\|Ga0207909_1003708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3559	Open in IMG/M
3300021093\|Ga0194123_10003928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	17327	Open in IMG/M
3300021131\|Ga0214206_1000599	All Organisms → cellular organisms → Bacteria	9466	Open in IMG/M
3300021424\|Ga0194117_10253104	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	848	Open in IMG/M
3300021962\|Ga0222713_10096155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2131	Open in IMG/M
3300024537\|Ga0255225_1006162	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1750	Open in IMG/M
3300024849\|Ga0255230_1062637	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	674	Open in IMG/M
3300027121\|Ga0255074_1025590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	739	Open in IMG/M
3300027123\|Ga0255090_1040823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	715	Open in IMG/M
3300027139\|Ga0255082_1015549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1290	Open in IMG/M
3300027154\|Ga0255111_1017533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1565	Open in IMG/M
3300027156\|Ga0255078_1008059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2506	Open in IMG/M
3300027193\|Ga0208800_1053982	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	547	Open in IMG/M
3300027196\|Ga0208438_1057440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	639	Open in IMG/M
3300027217\|Ga0208928_1050302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	626	Open in IMG/M
3300027320\|Ga0208923_1100890	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	510	Open in IMG/M
3300027494\|Ga0255094_1056977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	702	Open in IMG/M
3300027529\|Ga0255077_1068470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	663	Open in IMG/M
3300027538\|Ga0255085_1064195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	785	Open in IMG/M
3300027586\|Ga0208966_1048024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1221	Open in IMG/M
3300027598\|Ga0255121_1027023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1238	Open in IMG/M
3300027621\|Ga0208951_1000192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	26733	Open in IMG/M
3300027621\|Ga0208951_1005609	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4572	Open in IMG/M
3300027621\|Ga0208951_1034873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1522	Open in IMG/M
3300027707\|Ga0209443_1233944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	633	Open in IMG/M
3300027710\|Ga0209599_10001457	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	11213	Open in IMG/M
3300027710\|Ga0209599_10002174	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	8355	Open in IMG/M
3300027720\|Ga0209617_10014752	All Organisms → cellular organisms → Bacteria	3476	Open in IMG/M
3300027720\|Ga0209617_10097220	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1190	Open in IMG/M
3300027756\|Ga0209444_10105822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1142	Open in IMG/M
3300027764\|Ga0209134_10014065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2463	Open in IMG/M
3300027764\|Ga0209134_10151301	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	800	Open in IMG/M
3300027764\|Ga0209134_10238427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	624	Open in IMG/M
3300027785\|Ga0209246_10070491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1357	Open in IMG/M
3300027785\|Ga0209246_10204933	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300027797\|Ga0209107_10097429	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300027808\|Ga0209354_10007471	All Organisms → cellular organisms → Bacteria	4396	Open in IMG/M
3300027808\|Ga0209354_10150357	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300027973\|Ga0209298_10143401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1010	Open in IMG/M
3300027973\|Ga0209298_10268049	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	675	Open in IMG/M
3300027974\|Ga0209299_1113027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1053	Open in IMG/M
3300028261\|Ga0256316_1099817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	506	Open in IMG/M
3300031758\|Ga0315907_10342299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1218	Open in IMG/M
3300031758\|Ga0315907_10643578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	815	Open in IMG/M
3300031758\|Ga0315907_10916946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	641	Open in IMG/M
3300031758\|Ga0315907_11058101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	580	Open in IMG/M
3300031786\|Ga0315908_10664585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	861	Open in IMG/M
3300033992\|Ga0334992_0167439	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.25%
Host-Associated	Host-Associated	1.75%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	92.98%
Terrestrial	Environmental → Terrestrial	5.26%
Plants	Host-Associated → Plants	1.75%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	78.95%
Marine	Environmental → Aquatic → Marine	12.28%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	5.26%
Unclassified	Environmental → Aquatic → Unclassified	1.75%
Leaf	Host-Associated → Plants → Leaf	1.75%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	39.47%
Lake	Environmental → Aquatic → Freshwater → Lake	20.18%
River	Environmental → Aquatic → Freshwater → River	10.53%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	5.26%
Coastal	Environmental → Aquatic → Marine → Coastal	3.51%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.63%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	1.75%
Pond	Environmental → Aquatic → Freshwater → Pond	0.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	25.44%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.18%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	10.53%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	9.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	5.26%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.39%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	17.54%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	10.53%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.77%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	7.02%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	7.02%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.26%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.26%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	5.26%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	4.39%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	2.63%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.75%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.75%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.75%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	1.75%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	1.75%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.88%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.88%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	0.88%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	0.88%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.88%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000268	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2	Environmental	Open in IMG/M
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002136	M2t6FKB1 (104f)	Environmental	Open in IMG/M
3300002137	Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS1 (107f)	Environmental	Open in IMG/M
3300002386	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002447	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004788	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004793	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005758	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore	Environmental	Open in IMG/M
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental	Open in IMG/M
3300007649	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3	Environmental	Open in IMG/M
3300007708	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02	Environmental	Open in IMG/M
3300007862	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2um	Environmental	Open in IMG/M
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008066	Freshwater microbial communities from catchments in Singapore - Site BH	Environmental	Open in IMG/M
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental	Open in IMG/M
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental	Open in IMG/M
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental	Open in IMG/M
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010388	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300012667	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020524	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020532	Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020554	Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020572	Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021131	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion	Environmental	Open in IMG/M
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300024537	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024849	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027121	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027123	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d	Environmental	Open in IMG/M
3300027139	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h	Environmental	Open in IMG/M
3300027154	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h	Environmental	Open in IMG/M
3300027156	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027193	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)	Environmental	Open in IMG/M
3300027196	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes)	Environmental	Open in IMG/M
3300027217	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 (SPAdes)	Environmental	Open in IMG/M
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental	Open in IMG/M
3300027494	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d	Environmental	Open in IMG/M
3300027529	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h	Environmental	Open in IMG/M
3300027538	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d	Environmental	Open in IMG/M
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental	Open in IMG/M
3300027598	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8h	Environmental	Open in IMG/M
3300027621	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)	Environmental	Open in IMG/M
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental	Open in IMG/M
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental	Open in IMG/M
3300027720	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027764	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027974	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028261	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300033992	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
M3P_100186701	3300000268	Lotic	MPNSHASDYKRNLRKEIAGYFIVVLCALPIRFWLHAAVKEQDSWLGFLAGQAFGYLTVGAVGAIFVSKLNLRTKLILTFLIVAL*
JGI12547J11936_10053464	3300000736	Freshwater And Sediment	MTSNPKSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLILTFILVAL*
JGI12421J11937_100387642	3300000756	Freshwater And Sediment	MSNSHPSDFKRNLSREIAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASSSFNYVSVGLIGAVFVSKLSLRTKLILTFILVAL*
JGI12421J11937_100463032	3300000756	Freshwater And Sediment	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEADDGWGSFLASSSFTYILVGLIGAVFVSKLSLRTKLILTFVLVAL*
JGI12421J11937_101066061	3300000756	Freshwater And Sediment	MTGNPKSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLILTFILVAL*
JGI12421J11937_101194522	3300000756	Freshwater And Sediment	SLPPSSSLPRNPLNMSNSHPSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKDDDGWVSYLASTTFNSVSFALIGAVFVSKLSLRTKLILTFILVAV*
M2t6FKB1_12052741	3300002136	Marine	MPNNPPSDFKRNLRREVAGYFIVVLCALPIRFWLYSFVQDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLR
M2t6BS1_10650641	3300002137	Marine	MPNNPPSDFKRNLRREVAGYFIVVLCALPIRFWLYSFVQDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL*
B570J29613_10066212	3300002386	Freshwater	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILT
JGI24768J34885_102268341	3300002447	Freshwater And Sediment	MSNSHPSDFKRNLSREIAGYFIVILCALPIRFWLYWTXKEQDGWLAKLASSSFNYVSVGLIGAVFVSKLSLRTKLILTXILVAX*
B570J40625_1014097892	3300002835	Freshwater	MTSKTSDFKRNLRREIAGYFIVILCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLIATFVLVAL*
B570J40625_1017213201	3300002835	Freshwater	MTSNPKSDFKRNLRREIAAYFIVVLCALPIRFWLYSATKEDDGWLSYLASTTFSYISFGMIGAVFVSKLRLRYKLALTFLLVAI*
JGI25908J49247_100338472	3300003277	Freshwater Lake	MTSSPKSDYKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLILTFILVAL*
JGI25908J49247_100376712	3300003277	Freshwater Lake	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAL*
JGI25907J50239_10061052	3300003394	Freshwater Lake	MTSSPKSDYKRNLSREIAAYFXVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSXLSLRTKLIATFVLVAL*
JGI25920J50251_101416062	3300003404	Freshwater Lake	SREIAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSSSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL*
JGI25913J50563_10624321	3300003431	Freshwater Lake	PNSHPSDFKRNLRREIAAYFIVVLCALPIRFWIYSATKADDGWGSYLASSTFNYISFALIGAVFVSKLSLRTKLIVTFVLVAL*
JGI25925J51416_100741062	3300003497	Freshwater Lake	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEADDGWGSFLASSSFTYILVGLIGAVFVSKLSLRTKLILTFILVAL*
Ga0065166_103373182	3300004112	Freshwater Lake	MPNSHQSDFKRNIRREVAGYFIVVLCALPIRFWLYSFVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0007742_110943691	3300004788	Freshwater Lake	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAI*
Ga0007760_113509131	3300004793	Freshwater Lake	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVL
Ga0049083_102923131	3300005580	Freshwater Lentic	IAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSSSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL*
Ga0049082_100659202	3300005584	Freshwater Lentic	MTSNPKSDFKRNLSREIAAYFIVVLCALPFRFWLMTEFEGAKDGWGAYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAL*
Ga0049084_101962142	3300005585	Freshwater Lentic	MSNSHPSDFKRNLSREIAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASSSFNYVSVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0049084_102225132	3300005585	Freshwater Lentic	MTGNPKSDYKRNLSREIAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSTSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL*
Ga0078894_102371593	3300005662	Freshwater Lake	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFLIVAL*
Ga0078894_112386072	3300005662	Freshwater Lake	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRTRLILTFLIVAL*
Ga0078117_10103933	3300005758	Lake Water	MPSSHQSDFKRNLRREIAGYFLVVLCALPIRFWLYSTVQGQEGWLGFLAEQAFGYLSVGLVSAVFVSKLSLRTRLILTFILVAV*
Ga0102874_10910311	3300007546	Estuarine	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFL
Ga0102912_10244641	3300007649	Estuarine	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFLIV
Ga0102859_11994162	3300007708	Estuarine	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVCVSKLSLRVRLILTFIHD
Ga0105737_11606492	3300007862	Estuary Water	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRTRL
Ga0105746_11397912	3300007973	Estuary Water	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIYSTFEADDGWGSYLASASFTYILVGLIGAVFVSKLSLRTKLILTFILVAL*
Ga0108970_101085502	3300008055	Estuary	MPNSHQSDFKRNIRREVAGYFIVILCALPIRFWLYWNLKEQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0108970_104964294	3300008055	Estuary	MRNSHQSDFKRNLRREVAGYFIVILCALPIRFWLFSAMQGQEGWLGFLAEQAFGYLSVALVSAVFVSKLRLRTRLILTFLIVAL*
Ga0110927_10042082	3300008066	Freshwater	MPNSHQSDFKRNLRREIAGYFIVVLCALPIRFWIMATLMDQEGRWAFLASRVFGYLSVGLITAVAVSKLRLRTKLILTFLLVAL*
Ga0114347_12614911	3300008114	Freshwater, Plankton	MPNSGPSDFKRNLRREVAGYFIVILCALPIRFWLHAAVRDQDGWLSFLAEQAFGYLTVGLVSAVFVSKLRLRT
Ga0114351_10240255	3300008117	Freshwater, Plankton	MPNSGPSDFKRNLRREVAGYFIVILCALPIRFWLHAAVRDQDGWLSFLAEQAFGYLTVGLVSAVFVSKLRLRTRLILTFLIVAL*
Ga0114354_11557072	3300008119	Freshwater, Plankton	MPNSHQSDLKRNIRREVAGYFIVVLCALPIRFWLYSFVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0102854_10171151	3300009058	Estuarine	NLRREIAAYFIVVLCALPIRFWLYSATKEDDGWLSYLASTTFSYISFGMIGAVFVSKLRLRYKLALTFLLVAI*
Ga0114980_102757302	3300009152	Freshwater Lake	MSNNHPSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAI*
Ga0114980_105159472	3300009152	Freshwater Lake	SNMSNSHPSDFKRNLRREIAGYFIVVLFALPIRFWIYTATKDDGGWGSYLASSTFSTISVGLIGAVFVSKLSLRTKLILTFLLVAL*
Ga0114978_107629762	3300009159	Freshwater Lake	MSNSHPSDFKRNLRREIAGYFIVVLFALPIRFWIYTATKDDGGWGSYLASSTFSTISVGLIGAVFVSKLSLRTKLILTFLLVAL*
Ga0114982_10138101	3300009419	Deep Subsurface	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGCLTIGLVSAVFVSKFSLRTRLILTFLIVAL*
Ga0114982_11700101	3300009419	Deep Subsurface	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL*
Ga0114982_12262142	3300009419	Deep Subsurface	MPNSHQSDFKRNIRREVAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0114982_12675201	3300009419	Deep Subsurface	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAIFVSKYSLRTRLILTFLIVAL*
Ga0102883_10683581	3300010312	Estuarine	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSL
Ga0129333_110262961	3300010354	Freshwater To Marine Saline Gradient	MPNSGPSDFKRNLRREVAGYFIVILCALPIRFWLHAAVKDQDGWSSFLAEQAFGYLTVGLVSAVFVSKLRLRTRLILTFLIVAL*
Ga0136551_10100153	3300010388	Pond Fresh Water	MPNSHQSDFKRNIRREVAGYFIVILCALPVRFWLYWTLKEQDGWLAKLASSGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0129318_100368943	3300011009	Freshwater To Marine Saline Gradient	VAAVPKSDYKRNLRREIAAYFIVVLCALPIRFWIYSAAKDDGGWGSFLASTTFNSISFALIGAVFVSKLSLRTKLIVTFILVAL*
Ga0157210_10012724	3300012665	Freshwater	MTSSPKSDYKRNLSREIAAYFIVVLCALPIHFWIHSTFEADDGWGSFLASSSFTYILVGLIGAVFVSKLSLRTKLILTFILVAL*
Ga0157208_100004434	3300012667	Freshwater	MPNSHQSDFKRNIRREVAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASSGFGYINVGLIGAVFVSKLSLRTKLILTFILVAV*
Ga0211732_12875691	3300020141	Freshwater	MSNSHPSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKDDDGWVSYLASTTFNSVSFALIGAVFVSKLSLRTKLILTFILVAV
Ga0211732_13352013	3300020141	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0211732_14470691	3300020141	Freshwater	MRNNPPSDFKRNLRREVAGYFIVVLCALPIRFWLYAFVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0211736_103399886	3300020151	Freshwater	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFLIVAL
Ga0211736_105392153	3300020151	Freshwater	SSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSLRNKLILTFLIVAL
Ga0211734_108454402	3300020159	Freshwater	MSNSHPSDFKRNLSREIAAYFIVVLCALPIRFWIYSATKDDGGWGSYLASSTFSTISVGLIGAVFVSKLSLRTKLILTFVLVAI
Ga0211734_111638592	3300020159	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYSFVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0211733_101463904	3300020160	Freshwater	DYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSLRNKLILTFLIVAL
Ga0211726_104340241	3300020161	Freshwater	TPCGSPSSPPSSCPPKSLSNMRNNPPSDFKRNLRREVAGYFIVVLCALPIRFWLYAFVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0211731_113996974	3300020205	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSLRNKLILTFLIVAL
Ga0208858_10281332	3300020524	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRIRLILTFLIVAL
Ga0208601_10444531	3300020532	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTLGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0208599_10371451	3300020554	Freshwater	MTGNPKSDFKRNLRREIAAYFIVVLCALPIRFWLYSATKEDDGWLSYLASTTFSYISFGMIGAVFVSKLRLRYKLALTFLLVAI
Ga0207909_10037085	3300020572	Freshwater	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKLSLRTRLILTFLIVAL
Ga0194123_1000392811	3300021093	Freshwater Lake	MANNHQSDFKRNIRREIAGYFIVVLLALPIRFWVYSAVQGQEGWPGFLAEQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0214206_10005999	3300021131	Freshwater	MPNSHPSDFKRNLRREIAGYFLVVLCALPIRFWIYTTVKEQGGAAAFLATRTFNVVSVSLIGAVVASKLRLRYKLALTFVLVAI
Ga0194117_102531041	3300021424	Freshwater Lake	MPNSHPSDFKRNLRREVAGYFIVILCALPIRFWLYSAVQGQEGWLGFLAEQAFGYLTIGLVSAVFVSKLSLRARLILTFLIVAL
Ga0222713_100961552	3300021962	Estuarine Water	MPNSHPSDFKRNLKREIAGYFLVALCALPIRFWIYSAVKEQDGWAAFLAQRTFDYVSVGLIAVVVASKLRLRYKLALTFVLVAI
Ga0255225_10061621	3300024537	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKDQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLIL
Ga0255230_10626371	3300024849	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSL
Ga0255074_10255902	3300027121	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV
Ga0255090_10408231	3300027123	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLI
Ga0255082_10155493	3300027139	Freshwater	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLI
Ga0255111_10175333	3300027154	Freshwater	MRNNPPSDFKRNLRREVAGYFIVVLCALPIRFWLYSFVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKL
Ga0255078_10080594	3300027156	Freshwater	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLIL
Ga0208800_10539821	3300027193	Estuarine	MTSNPKSDFKRNLSREIAAYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFLIVAL
Ga0208438_10574401	3300027196	Estuarine	MPNSQTSDFKRRLRREIAGYFIVVLCALPVRFWIYSAVKEQDSWLAFLANRTFAYCTIGLIGAVAVSKLRLRTKLILTFILVAV
Ga0208928_10503021	3300027217	Estuarine	PPSSCPRRKASSMSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTFLIVAL
Ga0208923_11008901	3300027320	Estuarine	MSNSHPSDYKRNLRREVAGYFIVVLCALPIRFWLYSAVKEQDGWLGFLAGQAFGYLTIGLISAVFVSKFSLRTRLILTF
Ga0255094_10569772	3300027494	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFI
Ga0255077_10684701	3300027529	Freshwater	HSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSLRNKLILTFLIVAL
Ga0255085_10641951	3300027538	Freshwater	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKFSLRNKLILTFLI
Ga0208966_10480242	3300027586	Freshwater Lentic	MTSNPKSDFKRNLSREIAAYFIVVLCALPFRFWLMTEFEGAKDGWGAYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAL
Ga0255121_10270233	3300027598	Freshwater	MSNSHPSDFKRNLSREIAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASSSFNYVSVGLIGAVFVSKLSLRTKLILTFILVAL
Ga0208951_100019212	3300027621	Freshwater Lentic	MTGNPKSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLILTFILVAL
Ga0208951_10056094	3300027621	Freshwater Lentic	MTGNPKSDYKRNLSREIAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSSSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL
Ga0208951_10348732	3300027621	Freshwater Lentic	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAL
Ga0209443_12339441	3300027707	Freshwater Lake	MSNSHPSDFKRNLSREIAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSTSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL
Ga0209599_100014577	3300027710	Deep Subsurface	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGCLTIGLVSAVFVSKFSLRTRLILTFLIVAL
Ga0209599_100021747	3300027710	Deep Subsurface	MRNSHSSDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRVRLILTFILVAV
Ga0209617_100147523	3300027720	Freshwater And Sediment	MTSNPKSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLILTFILVAL
Ga0209617_100972202	3300027720	Freshwater And Sediment	MTGNPKSDYKRNLSREIAAYFIVVLCALPFRFWLMTEFKESGGWAAYLTSTSFSYISFGLIAAVFVSKLSLRTKLILTFILVAL
Ga0209444_101058222	3300027756	Freshwater Lake	MTSNPKSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAI
Ga0209134_100140653	3300027764	Freshwater Lake	MPNSHPSDFKRNLRREIAAYFIVVLCALPIRFWIYSATKADDGWGSYLASSTFNYISFALIGAVFVSKLSLRTKLIVTFVLVAL
Ga0209134_101513012	3300027764	Freshwater Lake	MSNSHPSDFKRNLSREIAAYFIVVLCALPIRFWLYSATKDDDGWVSYLASTTFSYISVSLIGAVFLSKLSLRTKLILTFILVAL
Ga0209134_102384272	3300027764	Freshwater Lake	MTSTPKSDFKRNLSREIAGYFIVVLCALPIRFWLHAAVKEQDSWLGFLAGQAFGYLTIGAIGAVFVSKLNLRTKLILTFLIVAL
Ga0209246_100704911	3300027785	Freshwater Lake	MTSSPKSDYKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSL
Ga0209246_102049332	3300027785	Freshwater Lake	VAAVPKSDYKRNLRREIAAYFIVVLCALPIRFWIYSAAKDDGGWGSYLASTTFNSISFALIGAVFVSKLSLRTKLIVTFVLVAL
Ga0209107_100974292	3300027797	Freshwater And Sediment	MTGSPKSDYKRNLSREIAAYFIVVLCALPIHFWIHSTFKADDGWGSYLASSSFTYILVGLIGAVFVSKLSLRTKLILTFVLVAL
Ga0209354_100074712	3300027808	Freshwater Lake	MTSSPKSDYKRNLSREIAAYFIVVLCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLIATFVLVAL
Ga0209354_101503572	3300027808	Freshwater Lake	VAAVPKSDYKRNLRREIAAYFIVVLCALPIRFWIYSAAKDDGGWGSFLASTTFNSISFALIGAVFVSKLSLRTKLIVTFILVAL
Ga0209298_101434012	3300027973	Freshwater Lake	MSNNHPSDFKRNLSREIAAYFIVVLCALPIHFWIHSTFEAHDGWGSYLASTSFGYILVGLIGAVFVSKLSLRTKLILTFVLVAI
Ga0209298_102680491	3300027973	Freshwater Lake	NMSNSHPSDFKRNLRREIAGYFIVVLFALPIRFWIYTATKDDGGWGSYLASSTFSTISVGLIGAVFVSKLSLRTKLILTFLLVAL
Ga0209299_11130272	3300027974	Freshwater Lake	MSNSHPSDFKRNLRREIAGYFIVVLFALPIRFWIYTATKDDGGWGSYLASSTFSTISVGLIGAVFVSKLSLRTKLILTFLLVAL
Ga0256316_10998171	3300028261	Freshwater	SDYKRNLRREVAGYFIVVLCALPIRFWLYAAVKDQDGWLGFLAGQAFGYLTIGLVSAVFVSKLSLRTRLILTFLIVAL
Ga0315907_103422992	3300031758	Freshwater	MPNSGPSDFKRNLRREVAGYFIVILCALPIRFWLHAAVRDQDGWLSFLAEQAFGYLTVGLVSAVFVSKLRLRTRLILTFLIVAL
Ga0315907_106435782	3300031758	Freshwater	MPNSHQSDFKRNIRREVAGYFIVILCALPIRFWLYWTLKEQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILV
Ga0315907_109169461	3300031758	Freshwater	MPNSGPSDFKRNLRREVAGYFIVILCALPIRFWLHAAVKDQDGWSSFLAEQAFGYLTVGLVSAVFVSKLRLRTRLILTFLIVAL
Ga0315907_110581011	3300031758	Freshwater	MPNSHQSDFKRNIRREVAGYFIVVLCALPIRFWLYSFVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILV
Ga0315908_106645852	3300031786	Freshwater	PPRSPSSMPNSHQSDFKRNIRREVAGYFIVILCALPIRFWLYSFVKDQDGWLAKLASNGFGYISVGLIGAVFVSKLSLRTKLILTFILVAV
Ga0334992_0167439_641_892	3300033992	Freshwater	MTSKTSDFKRNLRREIAGYFIVILCALPIRFWLYSATKADDGWGSYLASSTFNYISFGLIGAVFVSKLSLRTKLIATFVLVAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080911

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences