3300007971: Human saliva microbial communities from NIH, USA - visit 2, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007971
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053082 | Ga0114094
• Sample Name: Human saliva microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76340755
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus ilei	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F068942	Metagenome	124	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F080164	Metagenome	115	N
F098763	Metagenome	103	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114094_1000010	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	29842
Ga0114094_1000037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	19102
Ga0114094_1000106	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	14118
Ga0114094_1000109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	13904
Ga0114094_1000606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	7018
Ga0114094_1001606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4248
Ga0114094_1002951	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2931
Ga0114094_1005582	Not Available	1888
Ga0114094_1010134	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1257
Ga0114094_1017361	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	863
Ga0114094_1019274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus ilei	806
Ga0114094_1019973	Not Available	788
Ga0114094_1025100	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	676
Ga0114094_1029419	Not Available	610
Ga0114094_1030101	Not Available	600
Ga0114094_1030447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	596

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114094_1000010	Ga0114094_100001016	F071329	MRPLYSKGILMLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED*
Ga0114094_1000037	Ga0114094_10000377	F098763	MDRRTSLRVLSTALYFATKLFKAVVRTTISYDSSDEVEGKGGMNAVPTTVDE*
Ga0114094_1000106	Ga0114094_10001069	F047508	MLGHRLVEGRVKYPYLRDLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114094_1000109	Ga0114094_100010910	F053092	MQSDQGLILCLTHALLVLRALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114094_1000606	Ga0114094_10006069	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*
Ga0114094_1001606	Ga0114094_10016063	F040149	VADEGAEELRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHNSEDAIDYFVYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114094_1001606	Ga0114094_10016064	F055792	VEIASQALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEAGTTWRRYPLETLQKEGYILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVACLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0114094_1002951	Ga0114094_10029512	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYYRSHGFEGGRSMASNVLLPGSAH*
Ga0114094_1005582	Ga0114094_10055822	F103432	CQIMKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY*
Ga0114094_1010134	Ga0114094_10101342	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYQGLPINNMSILTLTISNVKGDWISSFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGTDNYGVTTAPATVLLKQHGANWAIYADYPNIGSYEFTSGSTAIGKLVNGTWVITLLVGKRDAVNFTELNFNQGGHDDGQGIKDNTYKAGIENFLKKLE*
Ga0114094_1017361	Ga0114094_10173612	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTNIQNNTT
Ga0114094_1019274	Ga0114094_10192741	F022002	MKNIYSPSFRSMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLHSIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELENARTVGDFKAFYALMMDRTVAHSEEAGASLTGSAKETYETYLKDLKEKMETS
Ga0114094_1019973	Ga0114094_10199731	F080164	MVGLTLCAAPQVTLRERASAFPLITEKAPSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSI
Ga0114094_1025100	Ga0114094_10251001	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKQLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQE
Ga0114094_1029419	Ga0114094_10294191	F073671	MNKEQAEHELAELHEKEQSLEKALELVREKIRELVNYTDKNKEQK*
Ga0114094_1030101	Ga0114094_10301011	F032313	FSKKITLMYRLLIAIFALTLMACDNNTPQEKPHEREKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGTGLTSVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKVPRFVGGSITKEFTCRNGVILRHWQGVNVNLVDTVNYVYNEDSNEIVLEGTGTRWYVLRLNKNAVEFLQRGHTLWGYFDWYY
Ga0114094_1030447	Ga0114094_10304472	F047127	ANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*