3300007968: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007968
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052898 | Ga0105969
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94673152
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium nucleatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F085821	Metagenome	111	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105969_100003	All Organisms → cellular organisms → Bacteria	285915
Ga0105969_100013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	134332
Ga0105969_100036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	85374
Ga0105969_100037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	85227
Ga0105969_100103	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	50404
Ga0105969_100194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	36178
Ga0105969_100208	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	34323
Ga0105969_100943	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10791
Ga0105969_100984	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10413
Ga0105969_101036	All Organisms → cellular organisms → Bacteria	10080
Ga0105969_101927	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6218
Ga0105969_102078	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5907
Ga0105969_102966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4338
Ga0105969_104268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3175
Ga0105969_107535	Not Available	1961
Ga0105969_109410	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1615
Ga0105969_113603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1173
Ga0105969_118747	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium nucleatum	888

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105969_100003	Ga0105969_100003139	F054109	MIKEKINMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLANDEKSEA*
Ga0105969_100013	Ga0105969_100013124	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKGNKIK*
Ga0105969_100013	Ga0105969_10001362	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFNYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK*
Ga0105969_100036	Ga0105969_10003676	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILFLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILLENEQFKLKKEDYLPDENSQKYKIFEDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEVAISE*
Ga0105969_100037	Ga0105969_10003765	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRITKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPFTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHAKSHNDPTYDEYLYEISADRSYIKEE*
Ga0105969_100103	Ga0105969_10010324	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMITYVYMFLKRNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0105969_100194	Ga0105969_10019414	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGMALYSRQYTFNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWEAFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDMETWYDLLQIIAEEFEKI*
Ga0105969_100194	Ga0105969_10019419	F047127	MKKTFAFILLIIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGKYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNRK*
Ga0105969_100194	Ga0105969_10019429	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYKGQGITDSYKETVK*
Ga0105969_100208	Ga0105969_1002083	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKV*
Ga0105969_100943	Ga0105969_1009434	F061927	MKKSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRETFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIGSCIGE*
Ga0105969_100984	Ga0105969_1009842	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKEGNILFEGSMLPCEACGVDSRSSVKSLDLESRIIGEAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0105969_100984	Ga0105969_1009843	F040149	VADEGAEELRGEMLIEEQGIPVLFVEVEAWYDGRVSSSEILSSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0105969_101036	Ga0105969_10103611	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKVVINYKELPVPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTRYILR*
Ga0105969_101927	Ga0105969_1019272	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMANNVLLPGSAH*
Ga0105969_102078	Ga0105969_1020783	F072446	MKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER*
Ga0105969_102966	Ga0105969_1029663	F047508	MLGHRLVEGRVKYPYLRRIWEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0105969_104268	Ga0105969_1042681	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105969_107535	Ga0105969_1075352	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKIYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY*
Ga0105969_109410	Ga0105969_1094102	F084342	VSGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLRDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0105969_113603	Ga0105969_1136033	F077405	QGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQKQKARLK*
Ga0105969_118747	Ga0105969_1187471	F097490	RNIENDWKILASVDDLSEIFNKSIKKIEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*