3300007967: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007967
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052888 | Ga0105958
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52911828
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F081510	Metagenome	114	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105958_100002	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58581
Ga0105958_100216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	10248
Ga0105958_101246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4458
Ga0105958_101271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4414
Ga0105958_102129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3228
Ga0105958_103069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2578
Ga0105958_104542	Not Available	1974
Ga0105958_105272	All Organisms → cellular organisms → Bacteria	1768
Ga0105958_105813	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1647
Ga0105958_110717	Not Available	1025

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105958_100002	Ga0105958_10000268	F081510	MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLESTKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0105958_100216	Ga0105958_1002164	F103431	MINLDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFRENIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0105958_101246	Ga0105958_1012463	F047508	MLGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKWSKLRALMEHIYHLRGDTYALSKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAACVVRDVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0105958_101271	Ga0105958_1012714	F098763	MDRRASLRILSPALHLATKLFEAAGRTTSSYDPSDEVEGKRGMNAIPTAVDE*
Ga0105958_102129	Ga0105958_1021292	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGLHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0105958_103069	Ga0105958_1030693	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWIVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKTS*
Ga0105958_104542	Ga0105958_1045423	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGRMLPCETRGVDPRSSVKSLDLESRIIGEAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0105958_105272	Ga0105958_1052722	F053092	MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIKKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105958_105813	Ga0105958_1058132	F094006	MAEELAKAPLTALSRARVAAMWSALEPAGPTGALYESAVCVEAHIGELQTGGIVRRSLFAFGGSNVLAVAELGAEAPHAIDMHDIAVCEPLSELFAEELEYAFNFGA*
Ga0105958_110717	Ga0105958_1107172	F054109	MFKEKTYMTGRSKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEA*