3300007909: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2

Overview

Basic Information

• IMG/M Taxon OID: 3300007909
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118143 | Gp0131538 | Ga0111548
• Sample Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Liverpool
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134348971
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F030405	Metagenome / Metatranscriptome	185	Y
F035352	Metagenome / Metatranscriptome	172	Y
F036302	Metagenome	170	Y
F043481	Metagenome / Metatranscriptome	156	Y
F046737	Metagenome	151	Y
F056198	Metagenome	138	Y
F086687	Metagenome	110	Y
F092304	Metagenome	107	Y
F103182	Metagenome	101	Y
F105437	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111548_1001814	All Organisms → cellular organisms → Archaea	5635
Ga0111548_1002353	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	4827
Ga0111548_1004198	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3424
Ga0111548_1004313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3362
Ga0111548_1020538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1283
Ga0111548_1025156	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1130
Ga0111548_1026269	Not Available	1100
Ga0111548_1027889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1060
Ga0111548_1069911	Not Available	560
Ga0111548_1071518	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111548_1001814	Ga0111548_10018146	F092304	MSQKDDKQLFESEVRESLEHKLVLRREAPLIGLTAFITALWGAKLFTAISPGSGLVFQLWGFNIHFHHFNYGFIFLVIALMLTFFEGPWFVRVQHLLFGSGLGLIVDEYWLLLTFDEHASNYFGPESQFISLIIAVIVTLLYAAIAVGVFFKSRKERKIWRRLYEAVK*
Ga0111548_1002353	Ga0111548_10023535	F036302	LTARQYGEVVLPDASIRAGFWYFSQKAITVQGGYGALFAVIVQILLSAGAIAVQF*
Ga0111548_1004198	Ga0111548_10041984	F105437	MKPEQLAKRIKELSAKLTFVPSEGIRIDFSSFTSPEQLVLLKNAELDERYRNRWTDQAVLENKELLVKGNQIVINRVVELFLFALPRALMLDEVEQWFFQKHFDLFLEGWIICKDNLSCWSEKNRQDFLLELKTNSTMKRGKSYGEEDKNYN*
Ga0111548_1004198	Ga0111548_10041985	F086687	MKTWQLNKKIDNLSQEIADPIKTEIKLDYNSFSEPERVLLDKVQEFIDKYAPGKPPRDVIVKNSALWVKGLEIFSRRTTELFVDIIPATFCCDELEEWYFKLYFYNFLQDWFEMVSKLRDMPKDQHQALLLERKEMGMLDKVFRFPKSGYETTNKKENAKQ*
Ga0111548_1004313	Ga0111548_10043132	F046737	MKSRIVTTSIKAILAFIVFAAILAACDNQQGMMHGGSGSTYMGNWNWIGILIGLAIGFLIGYLVARRRK*
Ga0111548_1020538	Ga0111548_10205383	F030405	DAMQGYDVVLFILALAKTVTPGGSPRREPGRAVPLTT*
Ga0111548_1025156	Ga0111548_10251563	F103182	VNGDNEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFIWLCRRPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVNIANPYTKLVEPES
Ga0111548_1026269	Ga0111548_10262693	F056198	RLHRAGSWYFSQKAVTVQGGYGALFAIMVQILLCAGAIAVQF*
Ga0111548_1027889	Ga0111548_10278892	F043481	MPLDIDLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTINTDEPTKQ*
Ga0111548_1069911	Ga0111548_10699112	F020363	CRRVAVARVFALVMRCRVMRLLLFSRVGKNRDTSRGTPAGAGAGRTADHLTFFFSQKILAVRSANDIYRPVTVR*
Ga0111548_1071518	Ga0111548_10715181	F035352	RENYGTAPEIVLRNHLLTRKLNLSLNPDVIIEGSKIKNGLLLLKNGVDPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKLEDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQMYPSGGLYLKANIEKMLQNAQMKKTEEIEKLIKYLQNI