3300007664: Human stool microbial communities from NIH, USA - visit 1, subject 765074482 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052776 | Ga0105542
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765074482 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197271323
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. 2_2_4	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F089053	Metagenome	109	Y
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105542_1000538	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	40762
Ga0105542_1003277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8231
Ga0105542_1004822	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. 2_2_4	5717
Ga0105542_1010746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2776
Ga0105542_1013810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2201
Ga0105542_1020942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1491
Ga0105542_1024536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1285
Ga0105542_1026189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1210
Ga0105542_1034496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	932
Ga0105542_1041984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	767
Ga0105542_1045686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	703

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105542_1000538	Ga0105542_100053839	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGEVEAIALN*
Ga0105542_1003277	Ga0105542_100327711	F068855	VPTVEAQGPQARKPLALQGLQAEKENENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0105542_1004822	Ga0105542_10048221	F051936	GKAFGFSVLQEHAVMTPVISIFFATLIIKYLYIHISIKSNYHAQ*
Ga0105542_1010746	Ga0105542_10107462	F089053	MEGPRPDKFAFGVKLERVVDECRPAKGCIRKWLYIFANGQPELSTAEEVNVKSMEAFL*
Ga0105542_1013810	Ga0105542_10138104	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLITCVTEETVEEVYQRGSNYDFDEPCAGNMPS*
Ga0105542_1020942	Ga0105542_10209422	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNVEKVEQKGALTPPYLGKVYFRSRLRGKG*
Ga0105542_1024536	Ga0105542_10245362	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK*
Ga0105542_1026189	Ga0105542_10261893	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILFYPFRSSPLLAITFLYHPKDFFMYRAAALFEYREKHQ*
Ga0105542_1034496	Ga0105542_10344961	F068855	MRKSLALQGLQAEKESENANVQNAGWLHSLDADYHYRGSDLHYHVNVSAALSEGGAGWGRNL
Ga0105542_1041984	Ga0105542_10419842	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLNLPNAFLKAFHLHAVRFPAAFLLVHRFYLVLEELLSCATAYL*
Ga0105542_1045686	Ga0105542_10456861	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPTGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWN