3300007641: Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007641
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052764 | Ga0105527
• Sample Name: Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133576380
• Sequencing Scaffolds: 12
• Novel Protein Genes: 34
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F044555	Metagenome / Metatranscriptome	154	N
F047755	Metagenome	149	Y
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F056682	Metagenome	137	Y
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F067720	Metagenome	125	Y
F073656	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N
F075481	Metagenome	119	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089054	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F094005	Metagenome / Metatranscriptome	106	N
F098313	Metagenome	104	N
F105375	Metagenome	100	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105527_100038	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	168149
Ga0105527_100050	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	157272
Ga0105527_100105	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	116246
Ga0105527_100112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	111819
Ga0105527_100947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	27214
Ga0105527_101106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	23300
Ga0105527_102150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	9883
Ga0105527_103285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5553
Ga0105527_106626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2244
Ga0105527_108768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1647
Ga0105527_113994	All Organisms → cellular organisms → Bacteria	994
Ga0105527_119220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	718

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105527_100038	Ga0105527_100038195	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP*
Ga0105527_100038	Ga0105527_10003879	F105375	MKNNETFQTTQHLDKLVINLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0105527_100038	Ga0105527_10003889	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIQIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHDK*
Ga0105527_100038	Ga0105527_10003895	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIISLYGLVS*
Ga0105527_100038	Ga0105527_10003896	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETTEKVITLDKKLKKLIEKLNE*
Ga0105527_100050	Ga0105527_100050104	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDEATV*
Ga0105527_100050	Ga0105527_100050106	F078006	MGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCHIKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0105527_100050	Ga0105527_100050112	F080673	LATIEINMDEIELLKLQNEALSYLRDNITKDEAYYILTTDKDIIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL*
Ga0105527_100050	Ga0105527_100050118	F057001	MTSKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKETVIQLCKDILPRVNNTFCAYKEVEREYYDKNDKDKNKKLKMNEIEDIAILGSSHKRFGYNEPIACDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVAYYLTHPKNER*
Ga0105527_100050	Ga0105527_100050124	F083452	MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR*
Ga0105527_100050	Ga0105527_100050143	F058555	MGTKIRFLHIMKSNFDKILTERYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTIKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEYFIKDVFLGVKGVEMSKAG*
Ga0105527_100050	Ga0105527_100050148	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKELKENATGKTKTDE*
Ga0105527_100050	Ga0105527_100050154	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDVKKKEDVGEGDKEE*
Ga0105527_100050	Ga0105527_100050155	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK*
Ga0105527_100050	Ga0105527_100050162	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNSYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGENNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIGLSNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSDWMSGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTRSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIHPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0105527_100050	Ga0105527_100050167	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL*
Ga0105527_100050	Ga0105527_100050174	F106193	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSEYIKP*
Ga0105527_100050	Ga0105527_100050190	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
Ga0105527_100050	Ga0105527_100050198	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRAKYANAFDQDSVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADDGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDVAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGVNTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDAKIGPNGQLIADPQGDILSYRILYPAQEVTKGKKG*
Ga0105527_100050	Ga0105527_100050201	F050794	MLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLEAITEQEFKNSFVRMDSMNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0105527_100050	Ga0105527_10005053	F083451	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFSGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTNKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0105527_100050	Ga0105527_1000507	F098313	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVGDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD*
Ga0105527_100050	Ga0105527_10005072	F078005	MKKSKFVKELEKIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTMASMDDRTFACLMSEVYKQKFTKAITISEDEDDEDN*
Ga0105527_100068	Ga0105527_10006830	F078004	MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0105527_100105	Ga0105527_10010511	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*
Ga0105527_100112	Ga0105527_100112100	F029444	MEVSEQLTGFELEDLKFWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGSKKAAPFFNF*
Ga0105527_100947	Ga0105527_10094724	F073656	MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALVAEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0105527_101106	Ga0105527_10110622	F047755	MESKKVKYLIDIINDMDIKDKLRLAICMSKSEWYGLIYNTKENYKKFDTMLKEIDEEYRTTLINFGQSKYFNINFAMAKLMEMETTEQNKVTLYLYNCIDKVNIYL*
Ga0105527_102150	Ga0105527_1021503	F074899	MSGRKQWNKQAATSSFLDKKPLESLILQGMEGSTTLGKDEVGSSNLPSSSK*
Ga0105527_103285	Ga0105527_10328510	F067720	MASTTYEHFVDINKMSAAQEQFRHITKMVTKCHRFAVLVDMVRNAGQLPQPFWLGAACGGGSCSAATVPART*
Ga0105527_106626	Ga0105527_1066263	F056682	VAEKPHKQNTMKMQSRAGKVANQPIGQSKTHSASFGAFSSKNRITFPIQELGKIYENQEVL*
Ga0105527_108768	Ga0105527_1087681	F029444	MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVG
Ga0105527_113994	Ga0105527_1139941	F076190	SITISVKNVFMAASRVSGRVWSLVRITIPNDLKFVKIRVEKPQNNSLYPHFQREPL*
Ga0105527_119220	Ga0105527_1192201	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRR