3300007524: Human stool microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052757 | Ga0105481
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183776594
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F051936	Metagenome	143	N
F068811	Metagenome	124	N
F074964	Metagenome	119	N
F076189	Metagenome	118	N
F078004	Metagenome	117	N
F081354	Metagenome	114	Y
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F089053	Metagenome	109	Y
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F098313	Metagenome	104	N
F099269	Metagenome	103	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105481_1000048	Not Available	154065
Ga0105481_1000301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	54138
Ga0105481_1000409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	43618
Ga0105481_1001953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	12086
Ga0105481_1003022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7950
Ga0105481_1005386	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	4532
Ga0105481_1008640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2837
Ga0105481_1010900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2300
Ga0105481_1011284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2234
Ga0105481_1012501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2046
Ga0105481_1013147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1957
Ga0105481_1015594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1684
Ga0105481_1016489	All Organisms → cellular organisms → Bacteria	1605
Ga0105481_1017138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1553
Ga0105481_1021422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1282
Ga0105481_1021928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1257
Ga0105481_1030162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	957
Ga0105481_1036052	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	821
Ga0105481_1040132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	749

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105481_1000048	Ga0105481_1000048151	F098313	MNGGILRLFYLPLLKKRMKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFVNLVRDKGDDRAFKLLWNFQSENEMTMRNICHESFHAAMSVCQYCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN*
Ga0105481_1000048	Ga0105481_100004818	F090484	MIKISFRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKNFWDGYEQSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSQEKIATVKSGMAEAEACCDEVGTSVAGVCGRISRRMKSYNNTVADKKADFNEVRDMYAEFAGDMAKAVGSVNEDICTYVKAEQFKEKIENMDITIRSLSNNNTTDNDTGLDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ*
Ga0105481_1000048	Ga0105481_1000048191	F099406	MAEVGYNSKFEGLEVDSRLEKVIQAEVATAEAEGKGGLIPAPPAGSQDGSKALLSNMTWGDNITKQYVDNAVSAAGWKKQIVTVLPNVDEAADNVMYLVKDDLASTETGNVYNEYILVTDPEGVKSLESIGMVSTSVDSTYLDLSIFPSTSGTLDEDSFAKVMDAYNNNITLGKLSFNYFSLDYFLDNDNSELKIIAVLFNNTNLEEEVPGSYIDIEMVTYVVAQDKTYRAIANTVTLFNTMLSYLEFMAKTPNVVTTLASLPTDAYNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGSDITQPLPTTGQFQSMSGDSVTIPVNSFIELSIWYINDKLVIRVGENA*
Ga0105481_1000048	Ga0105481_100004841	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKSLEIPLEYATKVAALAKDKKRLVAVCSQMLPKVGDTFIKFFLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGSEYKPFGFATAEMLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0105481_1000301	Ga0105481_100030137	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEEYSVAIFVSGKENYPEILEKIITKQEGLNRNVC*
Ga0105481_1000409	Ga0105481_100040938	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0105481_1001953	Ga0105481_10019533	F044554	MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0105481_1002662	Ga0105481_100266212	F078004	LSSRNTDLLFRKSSTGGLSAVAGSAALDIHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF*
Ga0105481_1003022	Ga0105481_100302214	F039198	MQITSCEVTNTKYIQIYLTKEELEKQETKELINKYKQEKYSVAIFVTGKENYPEILKKIVTKQVELNKNVC*
Ga0105481_1005386	Ga0105481_10053861	F051936	VLFFPLALRGKAFGFSVLQEHAVMTPIISIFFVMLIIRYLSIHISIKK*
Ga0105481_1008640	Ga0105481_10086403	F039198	MQITSCQFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC*
Ga0105481_1010900	Ga0105481_10109003	F088921	LEAAKKIAVKTSALGAAIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMWSK*
Ga0105481_1011284	Ga0105481_10112844	F047755	MENEKVKYLIDMINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI*
Ga0105481_1012501	Ga0105481_10125012	F092227	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMFLV*
Ga0105481_1013147	Ga0105481_10131474	F081354	IFPKSRRRSPLKKGAGCKNPLENGKAEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL*
Ga0105481_1015594	Ga0105481_10155942	F039198	MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVIKQKELNKNVC*
Ga0105481_1016489	Ga0105481_10164892	F099269	VGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0105481_1017138	Ga0105481_10171382	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVLLILNENVSETLCIFSIDKTNCCRI*
Ga0105481_1021422	Ga0105481_10214221	F026592	ASPRGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0105481_1021928	Ga0105481_10219283	F088920	LFVKWNPKNHHFIFLFLAFFSFVSANLHHYSAFGAGLILHLILHFSPKAAIFAPKRAILLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0105481_1030162	Ga0105481_10301622	F089053	MEGPRPDKFAFSVKLERVVDGCRPAKGCVKKWLYVFANGQPELSTAEEANVKNMEASL*
Ga0105481_1036052	Ga0105481_10360521	F051936	VLFFPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIKYLYIHISIKSNYHAQ*
Ga0105481_1040132	Ga0105481_10401322	F076189	RALFFISFPPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISVCFDLCAVQSAQKQLHMLCNFHENTLGLLIFYTNYAII*