3300007367: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007367
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052733 | Ga0104973
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52011166
• Sequencing Scaffolds: 14
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002471	Metagenome / Metatranscriptome	556	Y
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F097527	Metagenome	104	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104973_100046	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58450
Ga0104973_100073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44293
Ga0104973_100309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	15278
Ga0104973_100527	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9931
Ga0104973_100679	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8104
Ga0104973_100688	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8061
Ga0104973_100773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7244
Ga0104973_101307	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4716
Ga0104973_102402	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2746
Ga0104973_103067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2226
Ga0104973_104098	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1737
Ga0104973_104320	All Organisms → Viruses → Predicted Viral	1649
Ga0104973_115006	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	642
Ga0104973_118356	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104973_100046	Ga0104973_10004672	F081510	MKLPDMKAVKAAAKTTYTTSKILTKKYAPFILLGVGLVGYGYSVYEGVKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVESVVPNEGDFYGRWFKYSSNYAADDPEYNEAWVREVDNMLTARMAKAGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQELEPQLYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0104973_100073	Ga0104973_10007311	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAD*
Ga0104973_100073	Ga0104973_10007349	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0104973_100073	Ga0104973_10007350	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0104973_100073	Ga0104973_10007351	F027205	MRAVKESEEFERKALVEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0104973_100073	Ga0104973_10007356	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVKEARDHVEIED*
Ga0104973_100073	Ga0104973_10007358	F018385	MMAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0104973_100073	Ga0104973_1000737	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*
Ga0104973_100309	Ga0104973_1003098	F084342	VSGQCGAKLFLLGGYLAIPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0104973_100527	Ga0104973_1005273	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQSDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMANNVLLPGSAH*
Ga0104973_100679	Ga0104973_1006793	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0104973_100688	Ga0104973_1006881	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0104973_100773	Ga0104973_1007733	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAEDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0104973_101307	Ga0104973_1013072	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDMTCLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0104973_102402	Ga0104973_1024024	F045567	MRQRDGRDTLTEELEGGITPLLYRTEGEARRPWIRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0104973_103067	Ga0104973_1030672	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEERLVLASLYEFGNNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0104973_104098	Ga0104973_1040982	F097527	MEKIGNSTKTEKKKTRSENLVFITIPAAGVEPARPCGHWILSP
Ga0104973_104320	Ga0104973_1043201	F051213	MKASKLLWAVIMAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNQKVDWHIIGITAPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0104973_104320	Ga0104973_1043202	F099454	MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0104973_115006	Ga0104973_1150062	F002471	TSAKKNHAFLYHDRRQTRNAYRSCNAYNVFDSHAMFASSSSYMHGRNMSRRNVTHHVPRKNIVHAPRKVMNEPSTIYHALNASFAICRKDRKIVARKLGAKCKGDKTCIWVPKNICTNLVGPNMSWVPKTQA*
Ga0104973_118356	Ga0104973_1183561	F099454	VLTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK*