3300007355: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007355
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052687 | Ga0104762
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109878523
• Sequencing Scaffolds: 30
• Novel Protein Genes: 35
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F081456	Metagenome	114	N
F084342	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F092231	Metagenome	107	Y
F095632	Metagenome	105	N
F098763	Metagenome	103	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104762_1000071	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	56172
Ga0104762_1000107	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43649
Ga0104762_1000145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	38429
Ga0104762_1000239	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	28988
Ga0104762_1000365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	21414
Ga0104762_1000400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19983
Ga0104762_1000545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	15978
Ga0104762_1000583	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	15093
Ga0104762_1000710	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	12908
Ga0104762_1002031	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5580
Ga0104762_1002185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5262
Ga0104762_1002191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5249
Ga0104762_1002228	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5178
Ga0104762_1002349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	4961
Ga0104762_1002351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4958
Ga0104762_1005767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2362
Ga0104762_1007369	Not Available	1966
Ga0104762_1007962	All Organisms → cellular organisms → Bacteria	1852
Ga0104762_1011693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1392
Ga0104762_1013792	Not Available	1240
Ga0104762_1021288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	906
Ga0104762_1024417	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	821
Ga0104762_1024638	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	815
Ga0104762_1026384	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	775
Ga0104762_1027091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	761
Ga0104762_1027974	Not Available	744
Ga0104762_1033291	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	658
Ga0104762_1042859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	541
Ga0104762_1045445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	515
Ga0104762_1046129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104762_1000071	Ga0104762_10000715	F084342	LGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0104762_1000107	Ga0104762_100010719	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN*
Ga0104762_1000107	Ga0104762_100010754	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0104762_1000145	Ga0104762_100014510	F051214	MPGKIIANHTHLRIDTEFIELSDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0104762_1000239	Ga0104762_100023911	F045567	VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0104762_1000365	Ga0104762_10003653	F063778	MPETISEEAKQKLLQQLQDALGLVKDADTSAHDVAAITHSAADGHQLTEVMLQEMIAARGHLKSCADQINYAISNIKAIPLDPPPGD*
Ga0104762_1000400	Ga0104762_100040010	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAITVILYTISAD*
Ga0104762_1000545	Ga0104762_10005459	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104762_1000583	Ga0104762_10005838	F040149	VADEEAEELRGEVLIEEQGIPVLFVEVEAWCDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIDYFIYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0104762_1000583	Ga0104762_10005839	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDKGDDGTEASTTWGRYTLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPDVTRLDESITLQGIGGLRDLLMTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0104762_1000710	Ga0104762_10007107	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGRMNAVPTAVDE*
Ga0104762_1002031	Ga0104762_10020313	F047508	MLGHRLVEGRIKYPYLRSIWEYLRHSFDTEDVGRVVKRSELCALMEHIYYLRGDTYALSKALCTMYEAMSNGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*
Ga0104762_1002185	Ga0104762_10021852	F018385	MMTDLINSWLPYQELSLDKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPRENKILCFNWVNWTTYMFTHDGLNELVFMPDARRRTVSQLSFDHVPMKEVR*
Ga0104762_1002185	Ga0104762_10021858	F027205	MRAVKESEEFERKVLAEARKRDRAEGKEPRETLYPDPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEQDLFAFMDYILDEYDIPKRIRK*
Ga0104762_1002191	Ga0104762_10021915	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILSLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTEIDKWLADTRAHQSS*
Ga0104762_1002228	Ga0104762_100222812	F018385	MMDEYENQCGPYKEHSIEKAQDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGYSRKTISRLYYEEVK*
Ga0104762_1002228	Ga0104762_10022285	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNGKEYYDYWSAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0104762_1002228	Ga0104762_10022286	F027205	VSSRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPREALYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0104762_1002349	Ga0104762_10023491	F092231	MIIFPPQEFITWINMLVQFPWPIQLNDFPPYAEQLGWTPTSRPTWFNVLPDNDYAVTNISSDRDGNVRNLFLPMASNETEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSG
Ga0104762_1002351	Ga0104762_10023514	F053092	MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPIVKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104762_1005767	Ga0104762_10057673	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLIWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0104762_1007369	Ga0104762_10073692	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASERLRDEDTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0104762_1007962	Ga0104762_10079621	F030786	ESLVQMKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLADITEGDDSTEGVLKVKYFDDGADKIFENNNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
Ga0104762_1011693	Ga0104762_10116932	F092231	MIIFPPQEFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNNNKFAMLGSNKEGNVYNLYLHMAVNEADDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGR*
Ga0104762_1013792	Ga0104762_10137921	F022002	MSRRLALTLGLLLALLLSLPAYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIEETQAGSNDVDYTVTGLNYARRSTKTVYMFFYKGHLRRIVFIFNDLDVLKQIESELEDKYGTMAEGVGTSKKKSKVVFDAFTRLWVVRGFKYEGHFGFKDAYITYSDEELDRARSAEKESEI*
Ga0104762_1021288	Ga0104762_10212882	F092231	MIIFPPQEFITWTNTLMQFPWPIQLNDFPAYAEQLGWKPTSRPTWFNVVPDNDNEITMISSDGEGNVRNLFLRAALNKARNDEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWGFP
Ga0104762_1024417	Ga0104762_10244172	F085821	KGFKFTRQSDAQKFTFLVYDFFVAGNMPAVQLCIDYLEAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0104762_1024638	Ga0104762_10246382	F063777	LTVLNIKISALPAENNSFWMRLLFYLCIPFLLIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDKKSATDLNGVIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLEYDSETKTINGYNNKEQIEIAISE*
Ga0104762_1026384	Ga0104762_10263842	F057446	MNSISFGKTTIMSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSYFKTISAVLWLVIFALQFWLINTESRIEKSKIKEIVVRKNHWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0104762_1027091	Ga0104762_10270911	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0104762_1027974	Ga0104762_10279741	F070224	GVYIPPVSGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSGQNNLIVRKVGGSLIIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRPSGEVDRWQHLHLFVIEHDKKADRYYKYRIALVIYMDYDHPEAYHPEACIIH*
Ga0104762_1033291	Ga0104762_10332911	F054111	TSDQCDMVFKNLEKESMNKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPETNIFYFNFMEKTVKIKWDLDYGLFLETESLSTSDRDLFLNILDKEILFLI*
Ga0104762_1042859	Ga0104762_10428591	F101359	KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK*
Ga0104762_1045445	Ga0104762_10454451	F051212	MKKFFFIFVLYWLYSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTNEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTDIQANK
Ga0104762_1046129	Ga0104762_10461291	F092231	TWTNTLVQFPWPIQVNDFSSYAEKLGWAPTSMPDEFGVCSGNNGGRVILGDDRSGYVYELFLRMASNEAEDDEGAAELNDHLVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGSRAVLFQFFTPEGRWYFL*