3300007347: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764649650 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007347
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052681 | Ga0104340
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764649650 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88772761
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F090517	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F097490	Metagenome	104	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104340_100026	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	100155
Ga0104340_100053	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	59808
Ga0104340_100065	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	54789
Ga0104340_100070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	52598
Ga0104340_100072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	52356
Ga0104340_100086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	47874
Ga0104340_100135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	36250
Ga0104340_100167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	32092
Ga0104340_100262	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	24568
Ga0104340_100271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	23800
Ga0104340_100430	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	17313
Ga0104340_101100	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10055
Ga0104340_101114	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9952
Ga0104340_101289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9047
Ga0104340_101484	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8232
Ga0104340_102277	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5966
Ga0104340_103663	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4169
Ga0104340_103697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	4140
Ga0104340_105749	All Organisms → cellular organisms → Bacteria	2848
Ga0104340_105968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2757
Ga0104340_108151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2077

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104340_100026	Ga0104340_10002690	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNALRNIKGFPALVAEFYIRGFTYELPNYNFIESIHDFRFIDNIKTRDFHNGSYWEYYYYKETITNNYGNYGNCDYIENVGIDEKSHNNPTHVEGLWWLRAHRYFIKEE*
Ga0104340_100053	Ga0104340_10005327	F090516	MKSNLSVELFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVEPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADIYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0104340_100053	Ga0104340_1000533	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRYILR*
Ga0104340_100065	Ga0104340_10006525	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKIEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSEKIILLWQSRAPPVLS*
Ga0104340_100070	Ga0104340_10007037	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE*
Ga0104340_100072	Ga0104340_10007215	F101360	VSKEDALRRAVIAAHVAKVASQEKKKSLKELEEVMAPGDSSKPSIDGRQIGAVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTPDPRISARISPAQEEAIRELIAMGNISLIEIENTE*
Ga0104340_100072	Ga0104340_10007249	F103434	MVTFRPRRGRYLENGPHAVEVTVAVVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*
Ga0104340_100086	Ga0104340_10008648	F097490	MKVFCRIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0104340_100135	Ga0104340_10013510	F054111	MNKSLESITHEDFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTSDRDLFLNILDKEILFLI*
Ga0104340_100167	Ga0104340_10016712	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRALYSRLYTLNSLKKEFNTKPLMGQKEELSKEVSLPNTPKNWEVFIKKINLDKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDSETWYDLQQIIAKEFEKKGIYE*
Ga0104340_100167	Ga0104340_10016729	F081454	MKAFKLVLLLFITSASLVFGQEKKYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEAKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0104340_100262	Ga0104340_10026223	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHITDCDTDEEVTLEHIFRSVI*
Ga0104340_100271	Ga0104340_10027112	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSLLKHFEYGINILLCAGMMTYVYIYLKKNKKLSLKIVVIALAAALLFEYAYPWRLIFG*
Ga0104340_100430	Ga0104340_10043013	F061927	LNFKKKQNKPLIISFKNILLNLFLNYIIMKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0104340_101100	Ga0104340_1011005	F094006	MRGTLEPAGSTGALHEPVVSMEAHIGYLQAGGIARRGLFTFGGRHLLAVAELGAEAPHAIDMHDIALCEPLSELFTEELEYAFNFGA*
Ga0104340_101114	Ga0104340_1011141	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNVKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0104340_101289	Ga0104340_1012895	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGRMLPCETRGVDPRSSVKSLDLESRIIGEAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0104340_101484	Ga0104340_1014842	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0104340_102277	Ga0104340_1022773	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFNLIFGKKDYQQTAKQRILQRK*
Ga0104340_103663	Ga0104340_1036633	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAIIVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFKGGRSMASNVLLPGSAH*
Ga0104340_103697	Ga0104340_1036972	F092231	MIIFPPQEFITWTNRLMQFPWPIQLNDFPPYAEKLGWKPTSLPDEFGVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVAVGRKAWGEPFLLEAGDGPGVTWRFPGDMFSQVTGGFTAVLFNFFTPEGRRQFL*
Ga0104340_105749	Ga0104340_1057493	F053092	MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104340_105968	Ga0104340_1059684	F063778	MPETISEEEKLELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARDYLKSCADQIEYAISNIEAIPLDPPPDD*
Ga0104340_108151	Ga0104340_1081512	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*