3300007335: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007335
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052731 | Ga0104969
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 205945221
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F053092	Metagenome	141	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104969_1000005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	180643
Ga0104969_1000025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	124688
Ga0104969_1000186	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43283
Ga0104969_1001027	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	16115
Ga0104969_1002734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	8375
Ga0104969_1003153	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7556
Ga0104969_1006752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4251
Ga0104969_1013639	Not Available	2360
Ga0104969_1016774	Not Available	1971
Ga0104969_1016939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1955
Ga0104969_1018234	Not Available	1831
Ga0104969_1031066	All Organisms → Viruses → Predicted Viral	1144
Ga0104969_1032405	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1105
Ga0104969_1033032	Not Available	1085
Ga0104969_1035004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1035
Ga0104969_1056633	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	697

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104969_1000005	Ga0104969_1000005155	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNIISHALSLGINKIYAEPSTMSAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKLEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA*
Ga0104969_1000005	Ga0104969_100000520	F092232	MINQAKFIAEYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0104969_1000025	Ga0104969_100002574	F097490	MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSKMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKTIKYKYNNKEEYKIDKFYTDFPYNSFSNSKEKKKMHFMLKKKLDSSNIIKGYEFYNKDIETRTIKM*
Ga0104969_1000186	Ga0104969_100018623	F103434	VVGFRPRRGRYLENGPHVVEVTLAAVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPASLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0104969_1000186	Ga0104969_100018653	F101360	VSKENALRKAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLIEIEGGDA*
Ga0104969_1001027	Ga0104969_100102712	F095632	MTMSFKETPGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN*
Ga0104969_1002734	Ga0104969_10027347	F077405	LLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0104969_1003153	Ga0104969_100315311	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0104969_1006752	Ga0104969_10067528	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGG
Ga0104969_1013639	Ga0104969_10136393	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLFASPLRPVKTRGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRSSGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYHHPEAYHPGIC
Ga0104969_1016774	Ga0104969_10167742	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0104969_1016774	Ga0104969_10167743	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVHLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0104969_1016939	Ga0104969_10169392	F045567	VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0104969_1018234	Ga0104969_10182343	F040149	KEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETEVVQLLNIHRMF*
Ga0104969_1031066	Ga0104969_10310661	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0104969_1032405	Ga0104969_10324052	F070224	WSRVYNAPDSIYIIRSGIYIPPVSGEPIYLLASPLKSGHTPGNKLRTRDWVKVDYSDQNNIIIINVGDPLVIENFFAYYAAGFPKMKEYKLYHKGTGEEITKEDFDSIKFIRMPMALREIKKYKLPRTRRTLGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEAYHPGVCIIH*
Ga0104969_1033032	Ga0104969_10330322	F077403	MSAIYAEERISVHFEVRWRREYNPMDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGSALPDHYEGYQLYRGQVRGDSIWIEM*
Ga0104969_1035004	Ga0104969_10350041	F053092	MQSAQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIKKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104969_1056633	Ga0104969_10566332	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDSSDEVEGKRGMNAIPTAVDE*