3300007318: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007318
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052719 | Ga0104925
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74201090
• Sequencing Scaffolds: 23
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F032313	Metagenome	180	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F081454	Metagenome	114	N
F084342	Metagenome	112	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F105376	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104925_100412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	15746
Ga0104925_100596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12642
Ga0104925_100994	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	8874
Ga0104925_101000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8844
Ga0104925_101035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8686
Ga0104925_101456	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6928
Ga0104925_101470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6883
Ga0104925_102253	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	5153
Ga0104925_102543	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4711
Ga0104925_102854	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4297
Ga0104925_103722	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3489
Ga0104925_104356	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3070
Ga0104925_104530	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2967
Ga0104925_105067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2694
Ga0104925_106403	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2153
Ga0104925_108691	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1617
Ga0104925_109691	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1452
Ga0104925_110743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1314
Ga0104925_113689	Not Available	1036
Ga0104925_115456	Not Available	922
Ga0104925_115908	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	898
Ga0104925_116084	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	888
Ga0104925_119114	Not Available	758

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104925_100412	Ga0104925_1004128	F084342	VPAQCGAKLFLLGGYLTVPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0104925_100596	Ga0104925_10059611	F047127	MKKTFAFILFSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0104925_100994	Ga0104925_1009942	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0104925_101000	Ga0104925_1010006	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104925_101035	Ga0104925_1010356	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0104925_101456	Ga0104925_1014566	F098763	MDRRTSLRVLSTALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTAVDE*
Ga0104925_101470	Ga0104925_1014704	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVMPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYGDISEAMAEMMEYSHKIQRTEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPTDTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0104925_102253	Ga0104925_1022536	F105380	MTIVELDTSQYVKQGRIFKKFESNLLDSYMDGRQTQYNINLADLDDQISDGIVYADKSGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPGNGLCLAYRKKYEEYICLTNIFPDRREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK*
Ga0104925_102543	Ga0104925_1025433	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYLFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKNTGKITVLTDIKDFFWLDFDSETKIINGYNNKEQIEIAISE*
Ga0104925_102854	Ga0104925_1028544	F051213	MKAYTLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEIQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0104925_103722	Ga0104925_1037224	F043990	MIKKLGIIFTIGVVILGIVVYAGHKIEKSWIEGEFGVNTSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIL*
Ga0104925_104356	Ga0104925_1043563	F042387	MTGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNSNNMVVVDEEVTYDAKNSPYKNIKGFSILAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0104925_104530	Ga0104925_1045303	F061927	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENKP*
Ga0104925_105067	Ga0104925_1050674	F030786	MLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0104925_106403	Ga0104925_1064033	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQATEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0104925_108691	Ga0104925_1086911	F051212	NNFMKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEDVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0104925_109691	Ga0104925_1096913	F089056	MNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGIPNRRFKDKEEIVFMYYINSCCDNGLLLEECDISFIAITFTNKNEILFRKGIQ*
Ga0104925_110743	Ga0104925_1107432	F064819	MILKDNQGKDRIKFSDIIRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKNLSECKIRKFFFQNIDETIKIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK*
Ga0104925_113689	Ga0104925_1136891	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0104925_115456	Ga0104925_1154561	F032313	MYRLLIAIFALTLMACDNNTPQEKPREQEKHEVPVPKSKPQFDEVGERIWYGQTPAMRLDSTDYGVGLTPVLGMRTSRISKERFDSLFKQTVWEIKDIRAVETDFSLAKKNPIIFGHSITKEFTCRNGVILLHKQGVGVNHVDTVNYVYDDNEIVLEGTGTRWYVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK*
Ga0104925_115908	Ga0104925_1159082	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGEYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTEL
Ga0104925_116084	Ga0104925_1160841	F099454	RIYLYLVSKRTHKPKTHSGIKTLMKASKLLWTVVMALTFVLTSCDPFSQNEPTIEDRGYKYFDSTAQRKSFRVVTASGKTYNHKVDWHIIGILDQNSRTYLTKKVDTLSNGDLKISYDWISFTVRENKSVIDVELQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK*
Ga0104925_119114	Ga0104925_1191142	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQQTQVRRK*