NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007285

3300007285: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763496533



Overview

Basic Information
IMG/M Taxon OID3300007285 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052597 | Ga0102636
Sample NameHuman attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763496533
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size52921953
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4731
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F042387Metagenome158N
F043990Metagenome155N
F047127Metagenome150N
F051213Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F058221Metagenome135N
F059076Metagenome134N
F061927Metagenome131N
F077404Metagenome117N
F077405Metagenome117N
F090517Metagenome108N
F097525Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102636_100023All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473162652Open in IMG/M
Ga0102636_100049All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27997292Open in IMG/M
Ga0102636_100273All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27927585Open in IMG/M
Ga0102636_100480All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales17976Open in IMG/M
Ga0102636_100864All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium10483Open in IMG/M
Ga0102636_101326All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes6951Open in IMG/M
Ga0102636_101882All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium4826Open in IMG/M
Ga0102636_102095All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga4332Open in IMG/M
Ga0102636_102199All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium4134Open in IMG/M
Ga0102636_102637All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium3393Open in IMG/M
Ga0102636_102709All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3288Open in IMG/M
Ga0102636_102833All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales3099Open in IMG/M
Ga0102636_106468All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1076Open in IMG/M
Ga0102636_108218Not Available746Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102636_100023Ga0102636_10002372F077404MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFESYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFRFNRIR*
Ga0102636_100049Ga0102636_10004918F051213MKVSKFLWAVVMALTFVFTSCDPFSKNEPIVEGDVDKYFDSNAQHKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVTQRAK*
Ga0102636_100273Ga0102636_1002734F090517MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSAYASKDPTASYYEQARYYYTVTDRIFTLKTQVDYELNPPIDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0102636_100480Ga0102636_10048012F054111MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTLKIKWDLDYGLFLETESLSTSDKDLFLNILHKVILSL*
Ga0102636_100864Ga0102636_10086411F059076MTNKILLLGLLLKVASINAQAINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNIGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTTTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE*
Ga0102636_101326Ga0102636_1013262F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGTKKISLEDITGGDDSETGVLKVKYFDDEGADKIFENNNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0102636_101882Ga0102636_1018822F057446MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0102636_102095Ga0102636_1020957F097525MQQKKIMFKIQNAYQKIIFSIHGHRDRKENFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV*
Ga0102636_102199Ga0102636_1021995F043990MIKKLGIIFTFGVIILGIVVYVNHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIL*
Ga0102636_102637Ga0102636_1026376F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0102636_102709Ga0102636_1027093F042387MQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKDFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVSNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALATEFCSLDKDENTISDYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0102636_102833Ga0102636_1028334F047127MKKTFAFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK*
Ga0102636_106468Ga0102636_1064682F061927SSDSAQKVTEKIKNTYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0102636_108218Ga0102636_1082181F077405QGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDCLKIVQK*

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