3300007273: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ14 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300007273
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124989 | Ga0101448
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ14 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94655182
• Sequencing Scaffolds: 21
• Novel Protein Genes: 26
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011	1
Not Available	3
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F004819	Metagenome / Metatranscriptome	422	Y
F018191	Metagenome	236	Y
F021014	Metagenome	221	Y
F029594	Metagenome	188	Y
F033463	Metagenome / Metatranscriptome	177	N
F040605	Metagenome / Metatranscriptome	161	Y
F040846	Metagenome / Metatranscriptome	161	N
F041247	Metagenome / Metatranscriptome	160	N
F047767	Metagenome / Metatranscriptome	149	N
F048793	Metagenome / Metatranscriptome	147	N
F049683	Metagenome / Metatranscriptome	146	N
F053091	Metagenome / Metatranscriptome	141	N
F058285	Metagenome / Metatranscriptome	135	N
F061913	Metagenome / Metatranscriptome	131	N
F073277	Metagenome	120	Y
F076119	Metagenome / Metatranscriptome	118	N
F078834	Metagenome	116	N
F080001	Metagenome	115	N
F084452	Metagenome / Metatranscriptome	112	N
F087241	Metagenome / Metatranscriptome	110	N
F088730	Metagenome	109	Y
F088929	Metagenome / Metatranscriptome	109	Y
F093842	Metagenome / Metatranscriptome	106	N
F099228	Metagenome / Metatranscriptome	103	N
F105107	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101448_100209	All Organisms → cellular organisms → Bacteria	3883
Ga0101448_101007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	26754
Ga0101448_101024	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	4686
Ga0101448_102155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3622
Ga0101448_102786	All Organisms → cellular organisms → Bacteria	14249
Ga0101448_104122	All Organisms → Viruses → Predicted Viral	4851
Ga0101448_105523	All Organisms → cellular organisms → Archaea	15002
Ga0101448_107315	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	2088
Ga0101448_107348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011	8167
Ga0101448_109057	All Organisms → cellular organisms → Archaea	2071
Ga0101448_109323	Not Available	2252
Ga0101448_112589	All Organisms → Viruses → Predicted Viral	2389
Ga0101448_113316	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2226
Ga0101448_113750	All Organisms → Viruses → Predicted Viral	2981
Ga0101448_114290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2518
Ga0101448_114718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B	2736
Ga0101448_116686	Not Available	2168
Ga0101448_117357	Not Available	2125
Ga0101448_118266	All Organisms → Viruses → Predicted Viral	4411
Ga0101448_119857	All Organisms → Viruses → Predicted Viral	4968
Ga0101448_120409	All Organisms → Viruses → Predicted Viral	3152

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101448_100209	Ga0101448_1002095	F076119	MSGINKKYLFGSVVLFLGIFVLEGVLGLFGIEESILFLVYWILYFVWLFKGKDYLKKRSI
Ga0101448_101007	Ga0101448_10100713	F105107	MLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLFKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFD
Ga0101448_101024	Ga0101448_1010243	F049683	MYLIKKEELSGTALWLKENFEAIFLWFCVICIVVSALFILKLYLNRQK*
Ga0101448_102155	Ga0101448_1021551	F088929	SADLATVVKDNDANKISKALDRDVIIFFIVYPSIYMSLFL*
Ga0101448_102786	Ga0101448_1027867	F047767	MNSLVTNLYPRPNGTVAGENLSCATTGSGAQFAAFDTDTKYVMIDVQDNNVIVTFDGTAPTASNGHLLLKEKGLITLSALSAKAAKFLGSGGTAIVHASQFV*
Ga0101448_104122	Ga0101448_1041225	F004819	MEFYPKDKNPMLDERSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDITYHVTLHVQECNRTDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101448_105523	Ga0101448_10552319	F040846	MPLAATMGMLDIILIRPLKIRSSKKYFMERFGPAFFMRPAYCVDCDKKPIKIKDADLHGGWAGMNVEDPICPECYWVMNVSSWERFTAGFLDGTFTVEEFENWERKTYENENFVRETLNQDG*
Ga0101448_107315	Ga0101448_1073152	F053091	MNFNSYYLWPKKFVEDTVNAEEMAEKPFVDEYAEEILNKELYDLEEEDLKSLINQLSYTASFYARLRRTVMNHTGRIMLKRMMDEADFEAEFEQELKEILEEE*
Ga0101448_107348	Ga0101448_10734810	F021014	MGYEVKDGDVAIIISPDVEDGEWTGVLKTGLIFGESKYPEAMRNAMDYALTMAATTAVLEDYPELMDYFDDARHTILKEMFPKQYAESELELNKDMEYTKEGNVIKLTKWTKTLGEA*
Ga0101448_107348	Ga0101448_10734812	F040605	MEVDEDNNFLSAHEEGHTEDVHDLVSNVMHDVDDIRIYNLLVKERE*
Ga0101448_107348	Ga0101448_1073483	F073277	MKLAVTIDVDGDIMYVPEGAVFENFPKPKLFDNMEDAEEERAKWNTGVIVNYETGRSVQQIRSFTDAERARAEERARINRDDGTSTDQDTTQ*
Ga0101448_109057	Ga0101448_1090571	F078834	MIELFLWFIAIICLGMPSWLIYNSWNKSRLLNERLAQCDNTLLTDSAVKVTRIVSAPMGTTVTENATLVVAPTNSNQIRLIYRVTYSEGNKQDY
Ga0101448_109323	Ga0101448_1093233	F018191	MIYKFKRWVVLPAYTEIIIRADSDEEALKIVRAIDPQTLNWQETDPAEQRMTYEVIDENS
Ga0101448_112589	Ga0101448_1125892	F029594	MLPDEMEAEKNRKIIVAQADEIDILKRNVKDLQESLATCHKRIKELIDAT*
Ga0101448_113316	Ga0101448_1133161	F002374	ILASVSFFLCCYACARVGKLLNSVKGLDWDIIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNNVTDIRKNNIGG*
Ga0101448_113316	Ga0101448_1133163	F058285	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGXWSVEWSIS*
Ga0101448_113750	Ga0101448_1137504	F093842	MKLTILNFTTGHIHIHNVSNQQEVMNHVDKHSEKTWMLSTNKEFKIINH*
Ga0101448_114290	Ga0101448_1142901	F033463	MYDMQMPMMLRDILLPVIISSIYWITFYNKLLFLNLFIFVVVSIAYVYYCKWVNSNYESIFGKESIDEKLKDTNSLSRKLISAIWVSHFAFFFFGGISLG
Ga0101448_114718	Ga0101448_1147185	F048793	VKALLRVDDKKELSNPPRVQEKELKEPEKISLWTPKDLELKETELVSVFFRLEFSLRI*
Ga0101448_116686	Ga0101448_1166863	F099228	MRKLNKDFYDIATKNDWVDLSDFWSWPISEILDDIKLIPDRLWSKPFDGGDKEKGKGYNNRQSNINLPGTEKNSKKIPAKGWKSIMFLNDTGYSDNQILTFDALYENQWEYKKRLKYVNNIRTWTEMAQFSPKLKTFFEEKIFPYIGVAYIFVTQLEPGGIITQHNDVPDEARPLKKEDKLFAYDMCNVFNLCLNDVPYCHSVFNNKVMPSYDGCLMWTNTGKEHFVVNMNKEPQYKIIFQGFFKKPFREKVVNEKSEYLNANQLH*
Ga0101448_117357	Ga0101448_1173572	F087241	MEIINLLNNQYALEGMRRGDMFIEGHNRFGRRGVMLIIAVLVITVLVLTAIRLTQSIVANRKQPKLESRKEEE*
Ga0101448_118266	Ga0101448_1182662	F084452	MINKLIWNKVEEMFYWNISVDSPINQLPFTMEFILACQKEFSMKVRDKEYPIHLGGIMDWHDKTMGDFVKEIDKQYQHNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADVICSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTHG*
Ga0101448_118266	Ga0101448_1182663	F061913	MVEQGNFFVKCHNIYYNQQWLVDVLDSLKPSDWVNGVSRTGVAWTVSECRNIPYEGMWKDIVENINLDTVGSTERTADGQKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFELTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPLDLEEERVVFSVNIHSHPTEMFKKAVDGTWLNNNTENIGVSND*
Ga0101448_118266	Ga0101448_1182664	F041247	MTNFYSIQADKMKFNLDMLVDMYKTIDQTKWVHRQDKLPQYWPIDENDTFDRNHEFYKLLKENIHADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEEDNDWSKSXXXXXXXXNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRSKYNKGTLFTNNKAFWSMA*
Ga0101448_119857	Ga0101448_1198578	F080001	MDKNECKAVVELLSVTWNQAIDASSITIKAKGFWEYIEDLPYEDVKKTIKHMGLSGRKWAPRPGELRIAVLAHMRDEELPPEPEEAWTVLQAIGQKIYSGTYDYDKPHTVLADTIKRLGTNATALTTNADRAMFISLYEKTREAYILERYGYDSA
Ga0101448_120409	Ga0101448_1204093	F088730	MKIRNRQRNVPYKMPIKRDITKFYMNVASKINFYSWSIRNKYKTA*