NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093842

Metagenome / Metatranscriptome Family F093842

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093842
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 48 residues
Representative Sequence MKLTILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWMLSNDKEFKIINH
Number of Associated Samples 98
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 27.36 %
% of genes from short scaffolds (< 2000 bps) 78.30 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.415 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(29.245 % of family members)
Environment Ontology (ENVO) Unclassified
(73.585 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.623 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 53.06%    Coil/Unstructured: 46.94%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF13619KTSC 15.09
PF08279HTH_11 9.43
PF04545Sigma70_r4 2.83
PF00268Ribonuc_red_sm 1.89
PF04404ERF 1.89
PF00303Thymidylat_synt 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 1.89
COG0207Thymidylate synthaseNucleotide transport and metabolism [F] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.42 %
All OrganismsrootAll Organisms23.58 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573025|GS310G0146KB_1113364771470Not Available884Open in IMG/M
3300000115|DelMOSum2011_c10053279All Organisms → Viruses → Predicted Viral1578Open in IMG/M
3300000116|DelMOSpr2010_c10049782All Organisms → Viruses → Predicted Viral1840Open in IMG/M
3300000117|DelMOWin2010_c10166593Not Available710Open in IMG/M
3300000148|SI47jul10_100mDRAFT_c1002995All Organisms → Viruses → Predicted Viral4115Open in IMG/M
3300000199|SI39nov09_10mDRAFT_c1019551Not Available588Open in IMG/M
3300000237|SI34jun09_150mDRAFT_1012471Not Available1081Open in IMG/M
3300000947|BBAY92_10071040Not Available936Open in IMG/M
3300001450|JGI24006J15134_10149749Not Available766Open in IMG/M
3300001460|JGI24003J15210_10013438All Organisms → Viruses → Predicted Viral3243Open in IMG/M
3300001472|JGI24004J15324_10005338All Organisms → Viruses → Predicted Viral4923Open in IMG/M
3300001965|GOS2243_1081312All Organisms → Viruses → Predicted Viral1770Open in IMG/M
3300002524|JGI24927J35514_1012819Not Available654Open in IMG/M
3300003478|JGI26238J51125_1003547Not Available5001Open in IMG/M
3300003601|JGI26382J51730_1001072Not Available12221Open in IMG/M
3300004448|Ga0065861_1064336Not Available638Open in IMG/M
3300004460|Ga0066222_1418701Not Available1027Open in IMG/M
3300005432|Ga0066845_10083836All Organisms → Viruses → Predicted Viral1198Open in IMG/M
3300005433|Ga0066830_10038043Not Available972Open in IMG/M
3300005510|Ga0066825_10197925Not Available740Open in IMG/M
3300005510|Ga0066825_10326352Not Available564Open in IMG/M
3300005837|Ga0078893_10144434Not Available599Open in IMG/M
3300005941|Ga0070743_10195199Not Available665Open in IMG/M
3300005942|Ga0070742_10224691Not Available525Open in IMG/M
3300006484|Ga0070744_10159894Not Available645Open in IMG/M
3300006735|Ga0098038_1037630Not Available1783Open in IMG/M
3300006735|Ga0098038_1071290Not Available1229Open in IMG/M
3300006735|Ga0098038_1107725Not Available956Open in IMG/M
3300006749|Ga0098042_1005839All Organisms → Viruses → Predicted Viral4132Open in IMG/M
3300006793|Ga0098055_1279308Not Available626Open in IMG/M
3300006916|Ga0070750_10271829Not Available731Open in IMG/M
3300006924|Ga0098051_1198727Not Available524Open in IMG/M
3300006925|Ga0098050_1090837Not Available783Open in IMG/M
3300006929|Ga0098036_1208980Not Available592Open in IMG/M
3300006990|Ga0098046_1056656Not Available907Open in IMG/M
3300007273|Ga0101448_113750All Organisms → Viruses → Predicted Viral2981Open in IMG/M
3300007344|Ga0070745_1250358Not Available641Open in IMG/M
3300007538|Ga0099851_1049774Not Available1647Open in IMG/M
3300007725|Ga0102951_1026711All Organisms → Viruses → Predicted Viral1792Open in IMG/M
3300007778|Ga0102954_1014870Not Available2178Open in IMG/M
3300009000|Ga0102960_1037115Not Available1805Open in IMG/M
3300009050|Ga0102909_1064500Not Available905Open in IMG/M
3300009080|Ga0102815_10134117Not Available1359Open in IMG/M
3300009445|Ga0115553_1381550Not Available537Open in IMG/M
3300009703|Ga0114933_10000886Not Available35062Open in IMG/M
3300009705|Ga0115000_10004876Not Available10877Open in IMG/M
3300010149|Ga0098049_1126985Not Available792Open in IMG/M
3300010297|Ga0129345_1295909Not Available561Open in IMG/M
3300012520|Ga0129344_1406812Not Available934Open in IMG/M
3300012920|Ga0160423_10301999Not Available1101Open in IMG/M
3300012936|Ga0163109_10057082All Organisms → Viruses → Predicted Viral2864Open in IMG/M
3300012936|Ga0163109_10312913All Organisms → Viruses → Predicted Viral1150Open in IMG/M
3300017708|Ga0181369_1024060Not Available1463Open in IMG/M
3300017734|Ga0187222_1060236Not Available877Open in IMG/M
3300017744|Ga0181397_1135489Not Available635Open in IMG/M
3300017750|Ga0181405_1012562All Organisms → Viruses → Predicted Viral2409Open in IMG/M
3300017757|Ga0181420_1093940Not Available927Open in IMG/M
3300017779|Ga0181395_1012700All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2954Open in IMG/M
3300017949|Ga0181584_10124723All Organisms → Viruses → Predicted Viral1744Open in IMG/M
3300018876|Ga0181564_10547289Not Available617Open in IMG/M
3300019751|Ga0194029_1012926Not Available1217Open in IMG/M
3300019757|Ga0193964_1081924Not Available689Open in IMG/M
3300020258|Ga0211529_1075870Not Available570Open in IMG/M
3300020374|Ga0211477_10112308Not Available997Open in IMG/M
3300020378|Ga0211527_10025411All Organisms → Viruses → Predicted Viral2002Open in IMG/M
3300020385|Ga0211677_10017343All Organisms → Viruses → Predicted Viral3682Open in IMG/M
3300020388|Ga0211678_10021790All Organisms → Viruses → Predicted Viral3304Open in IMG/M
3300020404|Ga0211659_10251960Not Available783Open in IMG/M
3300020416|Ga0211644_10190114Not Available841Open in IMG/M
3300020440|Ga0211518_10294709Not Available769Open in IMG/M
3300020440|Ga0211518_10353649Not Available685Open in IMG/M
3300020452|Ga0211545_10434459Not Available596Open in IMG/M
3300021375|Ga0213869_10340453Not Available629Open in IMG/M
3300021957|Ga0222717_10240294Not Available1056Open in IMG/M
3300021957|Ga0222717_10249071Not Available1032Open in IMG/M
3300021958|Ga0222718_10390110Not Available698Open in IMG/M
3300021958|Ga0222718_10420176Not Available663Open in IMG/M
3300021959|Ga0222716_10179975All Organisms → Viruses → Predicted Viral1355Open in IMG/M
3300022178|Ga0196887_1039133All Organisms → Viruses → Predicted Viral1270Open in IMG/M
(restricted) 3300022933|Ga0233427_10291864Not Available686Open in IMG/M
3300024346|Ga0244775_11536778Not Available508Open in IMG/M
3300025084|Ga0208298_1000829Not Available12211Open in IMG/M
3300025086|Ga0208157_1009633All Organisms → Viruses → Predicted Viral3245Open in IMG/M
3300025086|Ga0208157_1070722Not Available890Open in IMG/M
3300025098|Ga0208434_1063001Not Available785Open in IMG/M
3300025101|Ga0208159_1017706Not Available1767Open in IMG/M
3300025102|Ga0208666_1091962Not Available762Open in IMG/M
3300025137|Ga0209336_10001530Not Available11249Open in IMG/M
3300025151|Ga0209645_1201724Not Available586Open in IMG/M
3300025647|Ga0208160_1144140Not Available582Open in IMG/M
3300025652|Ga0208134_1094270Not Available839Open in IMG/M
3300025655|Ga0208795_1087344Not Available854Open in IMG/M
3300025667|Ga0209043_1008741All Organisms → Viruses → Predicted Viral4242Open in IMG/M
3300025719|Ga0209252_1067893Not Available1280Open in IMG/M
3300025722|Ga0209660_1017164All Organisms → Viruses2972Open in IMG/M
3300025892|Ga0209630_10291719Not Available746Open in IMG/M
3300026136|Ga0208763_1000189Not Available13469Open in IMG/M
3300027170|Ga0208963_1014712All Organisms → Viruses → Predicted Viral1400Open in IMG/M
3300027234|Ga0208170_1045880Not Available886Open in IMG/M
3300027801|Ga0209091_10078718Not Available1818Open in IMG/M
(restricted) 3300027861|Ga0233415_10163621Not Available1013Open in IMG/M
3300028671|Ga0257132_1119445Not Available559Open in IMG/M
3300029309|Ga0183683_1000059Not Available62934Open in IMG/M
3300029448|Ga0183755_1071066Not Available779Open in IMG/M
3300031675|Ga0302122_10055886All Organisms → Viruses → Predicted Viral1779Open in IMG/M
3300031775|Ga0315326_10356744Not Available953Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine29.25%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine11.32%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine10.38%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.55%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.72%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.72%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine3.77%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.83%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.83%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.89%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.89%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.89%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.89%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.94%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat0.94%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.94%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.94%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine0.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.94%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.94%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.94%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573025Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-FOS-0p8-Hyp-75mEnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300000199Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 10mEnvironmentalOpen in IMG/M
3300000237Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 150mEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001965Marine microbial communities from Coastal Floreana, Equador - GS028EnvironmentalOpen in IMG/M
3300002524Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35EnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003601Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005432Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78EnvironmentalOpen in IMG/M
3300005433Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45BEnvironmentalOpen in IMG/M
3300005510Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007273Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ14 time pointEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300007778Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009050Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300012520Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017734Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018876Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019757Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_7_MGEnvironmentalOpen in IMG/M
3300020258Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)EnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020378Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020388Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025667Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025719Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026136Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)EnvironmentalOpen in IMG/M
3300027170Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)EnvironmentalOpen in IMG/M
3300027234Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028671Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029309Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS310G0146KB_004402802189573025Marine EstuarineMKLTILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWMLSNDKEFKIINH
DelMOSum2011_1005327963300000115MarineMKLTILNFTTGHIHIHNVSSQTEVINYVDSHSDKTWMLSNDKEFKIINH*
DelMOSpr2010_1004978223300000116MarineMKLTILNFTTGHIHIHNVSSQTEVINYVDSHSDKAWMLSNDKEFKIINH*
DelMOWin2010_1016659323300000117MarineMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH*
SI47jul10_100mDRAFT_1002995113300000148MarineMKLTILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH*
SI39nov09_10mDRAFT_101955123300000199MarineMKLTILNFTTGHIHVHSVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH*
SI34jun09_150mDRAFT_101247113300000237MarineIILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH*
BBAY92_1007104013300000947Macroalgal SurfaceMKLTILNFTTGQIHIHNVSSQQEVMNYVDSHSDKTWMLSTNKEFKIINH*
JGI24006J15134_1014974913300001450MarineMKLTILNFTTGHIHIHNVSSQTEVTNYVDSHXDKTWMLSNDKEXKIINH*
JGI24003J15210_1001343833300001460MarineMKLTILNFTTGCIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH*
JGI24004J15324_1000533893300001472MarineMKLTILNFTTGHIHIHNVSSQTEVTNYVDSHADKTWMLSNDKEFKIINH*
GOS2243_108131273300001965MarineMKLTILNFTTGHIHIHNVSSQQEVMNYVDIHSNKTWMLSTNEEFKIINH*
JGI24927J35514_101281923300002524MarineMKLTILNFTTGHIHIHNVSSQTEVMNHVDSHSDKTWMLSNDKEFKIINH*
JGI26238J51125_100354753300003478MarineMKLXILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH*
JGI26382J51730_1001072203300003601MarineMKLIILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH*
Ga0065861_106433633300004448MarineMKLTILNFTTGHIHIHNVLSQSEVKKYVDNQSPHKTWMLSNDKEFKI
Ga0066222_141870143300004460MarineMKLTILNFTTGHIHIHNVSNQTEVTNYVDSHADKTWMLSNDKEFKIINH*
Ga0066845_1008383623300005432MarineMKLTILNFATGHIHIHNVSNQQEVMNHVDKHSDKTWMLSTNEEFKIINH*
Ga0066830_1003804343300005433MarineMKLTILNFTTGHIHIHNVSSQQEVMNHVDKHSEKTWMLSTNKEFKIINH*
Ga0066825_1019792523300005510MarineMKLTILNFTTGQIHIHNVSNQREVINYVDKHSDKTWMLSTNKEFKIINH*
Ga0066825_1032635223300005510MarineMKLTILNFTTGHIHIHNVSNQQEVMNHVDKHSDKTWMLSTNEEFKIINH*
Ga0078893_1014443433300005837Marine Surface WaterNMKLTILNFTTGQIHIHNVSSQQEVMNYVDSHSDKTWMLSTNKEFKIINH*
Ga0070743_1019519923300005941EstuarineMKLTILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWMLSNDKEFKIINH*
Ga0070742_1022469113300005942EstuarineFTTGHIHIHNVSSQTEVTNYVDSHTDKTWMLSNDKEFKIINH*
Ga0070744_1015989423300006484EstuarineMKLTILNFTTGHIHIHNVSSQTEVTNYVDSHTDKTWMLSNDKEFKIINH*
Ga0098038_103763043300006735MarineMKLTILNFTTGHIHIHNVSNQSEVKKYVDNQSPHKTWMLSTNEEFKIINH*
Ga0098038_107129043300006735MarineMKLTILNFTTGHIHIHNVSSQQEVKKYVDNQSPHKTWMLSNDKEFKIINH*
Ga0098038_110772543300006735MarineMKLTILNFTTGHIHIHNVSSQQEVISHVDKHSEKTWMLSNDKEFKIINH*
Ga0098042_1005839153300006749MarineMKLTILNFTTGHIHIHNVSNQSEVKKYVDNQSPHKTWMLSTNKEFKIINH*
Ga0098055_127930843300006793MarineMKLTILNFTTGHIHIHNVSSQQEVKKYVDNQSPHKT
Ga0070750_1027182923300006916AqueousMKLTILNFTTGHIHIHNVSSQTEVKKYVDNQSPHKTWMLSNDKEFKIINH*
Ga0098051_119872733300006924MarineMKLTILNFTTGHIHIHNVSSQQEVMNHVDKHSEKTWMLSTNKEFKIIN
Ga0098050_109083743300006925MarineMKLTILNFTTGHIHIHNVSSQQEVISHVDKHSEKTWMLSNDDEFKIINH*
Ga0098036_120898013300006929MarineMKLTILNFTTGHIHIHNVSSQQEVKKYVDNQSPHKTWMLSND
Ga0098046_105665643300006990MarineMKLTILNFTTGHIHIHNVSSKQEVISYVDKHSEKTWMLSNDKEFKIINH*
Ga0101448_11375043300007273Marine Surface WaterMKLTILNFTTGHIHIHNVSNQQEVMNHVDKHSEKTWMLSTNKEFKIINH*
Ga0070745_125035823300007344AqueousMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSSHKTWMLSNDKEFKIINH*
Ga0099851_104977443300007538AqueousMKLTILDYSNGKIHIHNVSSQQEVINYVDTHADKTWMLSTENEFEIIKH*
Ga0102951_102671173300007725WaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSTDSEFKIINH*
Ga0102954_101487033300007778WaterMKLTILNFTTGHIHVHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH*
Ga0102960_103711523300009000Pond WaterMKLTILNFTTGHIHIHNVSSQTEVMNYVDSHSDKTWMLSNDKEFKIINH*
Ga0102909_106450013300009050EstuarineMKLTILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWM
Ga0102815_1013411713300009080EstuarineILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH*
Ga0115553_138155013300009445Pelagic MarineHIHNVSSQTEVMNYVDSHSDKTWMLSNDKEFKIINH*
Ga0114933_10000886103300009703Deep SubsurfaceMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSTNKEFKIINH*
Ga0115000_10004876133300009705MarineMKLTILNFTTGHIHVHNVASHSEVKKYVDNQSPHKTWMLSNDKEFKIINH*
Ga0098049_112698513300010149MarineMKLTILNFTTGHIHIHNVSSQSEVINHVDSHSDKTWMLSNDKEFKIINH*
Ga0129345_129590923300010297Freshwater To Marine Saline GradientMKLTILNYSTGKVHVHNVASQQEVINYVDTHADKTWMLSTDNEFEIIKH*
Ga0129344_140681223300012520AqueousMKLTILDYSNGKIHVHNVSSQQEVINYVDTHADKTWMLSTDNEFEIIKH*
Ga0160423_1030199913300012920Surface SeawaterQIRINIDNYNMKLTILNFTTGHIHIHNVSSQQEVMNHVDKHSDKTWMLSTNEEFKIINH*
Ga0163109_1005708273300012936Surface SeawaterLNFTTGHIHIHNVSSQQEVMNHVDKHSEKTWMLSTNKEFKIINHQ*
Ga0163109_1031291343300012936Surface SeawaterMKLTILNFTTGHIHIHNVSSQQEVMNHVDKHSDKTWMLSTNEEFKIINH*
Ga0181369_102406013300017708MarineMKLTILNFTTGHIHIHNVSSQQEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0187222_106023643300017734SeawaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKT
Ga0181397_113548913300017744SeawaterMKLTILNFTTGHIHIHNVSSQTEVMNHVDSHSDKTWM
Ga0181405_101256213300017750SeawaterHIHIHNVSSQTEVMNHVDSHSDKTWMLSNDNEFKIINH
Ga0181420_109394043300017757SeawaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLS
Ga0181395_101270073300017779SeawaterHIHIHNVSSQTEVMNHVDSHSDKTWMLSNDKEFKIINH
Ga0181584_1012472323300017949Salt MarshMKLTILNFTTGQIHIHNVSSQREVINYVDKHSDKTWMLSTNKEFKIINH
Ga0181564_1054728943300018876Salt MarshMKLTILNFTTGQIHIHNVSSQREVINYVDKHSDKTWMLS
Ga0194029_101292623300019751FreshwaterMKLTILNYSTGKIHIHNVSSQQEVVNYVDTHADKTWMLSTENEFEIIKH
Ga0193964_108192423300019757Freshwater Microbial MatMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0211529_107587013300020258MarineMKLTILNFTTGQIHIHNVSSQQEVINYVDKHSDKTWMLSTNKEFKIINH
Ga0211477_1011230813300020374MarineMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSTNKEFKIINH
Ga0211527_1002541123300020378MarineMKLTILNFTTGQIHIHNVSSQREVINYVDKHADKTWMLSTNKEFKIINH
Ga0211677_1001734353300020385MarineMKLTILNFTTGHIHIHNVSSQTEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0211678_1002179063300020388MarineMKLTILNFTTGHIHIHNVSSQTEVMNHVDSHSDKTWMLSNDKEFKIINH
Ga0211659_1025196033300020404MarineYYILKYFLNNTQQTRTNIDNYNMKLTILNFTTGHIHIHNVSSQQEVMNYVDIHSNKTWMLSTNEEFKIINH
Ga0211644_1019011423300020416MarineMKLTILNFTTGHIHIHNVSSQQEVMNYVDIHSNKTWMLSTNEEFKIINH
Ga0211518_1029470923300020440MarineMKLTILNFTTGQIHIHNVSSQSEVKKYVDNQSPHKTWMLSTNKEFKIINH
Ga0211518_1035364913300020440MarineMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLST
Ga0211545_1043445923300020452MarinePMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0213869_1034045323300021375SeawaterMKLTILNFTTGHIHIHNVSSQTEVINYVDSHSDKTWMLSNDKEFKIINH
Ga0222717_1024029423300021957Estuarine WaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSTNSEFKIINH
Ga0222717_1024907123300021957Estuarine WaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNNKEFKIINH
Ga0222718_1039011023300021958Estuarine WaterMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSTDSEFKIINH
Ga0222718_1042017623300021958Estuarine WaterMKLTILNFTTGHIHVHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0222716_1017997563300021959Estuarine WaterMKLTILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWMLSNDKE
Ga0196887_103913363300022178AqueousMKLTILNFTTGHIHIHNVSSQTEVINYVDSHSDKTWMLSNDKEFKI
(restricted) Ga0233427_1029186413300022933SeawaterMKLTILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKII
Ga0244775_1153677823300024346EstuarineMKLTILNFTTGHIHIHNVSSQTEVTNYVDSHADKTWMLSNDKEFKIINH
Ga0208298_100082973300025084MarineMKLTILNFTTGHIHIHNVSSQSEVINHVDSHSDKTWMLSNDKEFKIINH
Ga0208157_100963313300025086MarineMKLTILNFTTGHIHIHNVSSQQEVISHVDKHSEKTWMLSNDKEFKIINH
Ga0208157_107072213300025086MarineIRINIDNYNMKLTILNFTTGHIHIHNVSNQSEVKKYVDNQSPHKTWMLSTNEEFKIINH
Ga0208434_106300133300025098MarineMKLTILNFTTGHIHIHNVSSQQEVISYVDKHSEKTWMLSNDKEFKIINH
Ga0208159_101770643300025101MarineMKLTILNFTTGHIHIHNVSNQSEVKKYVDNQSPHKTWMLSTNKEFKIINH
Ga0208666_109196223300025102MarineMKLTILNFTTGHIHIHNVSNQSEVKKYVDNQSPHKTWMLSTNEEFKIINH
Ga0209336_1000153043300025137MarineMKLTILNFTTGHIHIHNVSSQTEVTNYVDSHTDKTWMLSNDKEFKIINH
Ga0209645_120172413300025151MarineMKLTILNFTTGHIHIHNVSNQQEVMNHVDKHSEKTWMLSTNKEFKIINH
Ga0208160_114414013300025647AqueousMKLTILNYSTGKIHVHNVASQQEVINYVDTHADKTWMLSTDNEFEIIKH
Ga0208134_109427053300025652AqueousMKLTILNFTTGHIHIHNVSSQTEVINYVDSHSDKTWMLSND
Ga0208795_108734433300025655AqueousMKLTILDYSNGKIHIHNVSSQQEVINYVDTHADKTWMLSTENEFEIIKH
Ga0209043_100874163300025667MarineMKLTILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH
Ga0209252_106789353300025719MarineMKLIILNFTTGHIHIHNVSSQSEVIKYVDSHSDKTWMLSNDKEFKIINH
Ga0209660_101716443300025722MarineMKLIILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0209630_1029171943300025892Pelagic MarineMKLTILNFTTGHIHIHNVSSQSEVMNYVDSHSDKTWMLSNNKEFKIINH
Ga0208763_100018983300026136MarineMKLTILNFATGHIHIHNVSNQQEVMNHVDKHSDKTWMLSTNEEFKIINH
Ga0208963_101471243300027170MarineMKLTILNFTTGHIHIHNVSSQTEVMNHVDSHSNKTWMLSNDKEFKIINH
Ga0208170_104588023300027234EstuarineMKLIILNFTTGHIHIHNVSSQSEVIKYIDSHSDKTWMLSNDKEFKIINH
Ga0209091_1007871863300027801MarineMKLTILNFTTGHIHVHNVASHSEVKKYVDNQSPHKTWMLSNDKEFKIINH
(restricted) Ga0233415_1016362123300027861SeawaterMKLTILNFTTGRIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0257132_111944533300028671MarineMKLTILNFTTGRIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKI
Ga0183683_1000059733300029309MarineMKLTILNFTTGHIHIHNVSSQQEVMNHVDKHSEKTWMLSTNKEFKIINH
Ga0183755_107106653300029448MarineMKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSND
Ga0302122_1005588613300031675MarineMKLTILNFTTGHIHVHNVASHSEVKKYVDNQSPHKTWML
Ga0315326_1035674413300031775SeawaterTILNFTTGHIHIHNVSSQTEVMNHVDSHSDKTWMLSNDKEFKIINH


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