3300007268: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763840445 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007268
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052712 | Ga0104869
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763840445 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27143538
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F076912	Metagenome	117	Y
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F094006	Metagenome	106	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104869_100368	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4219
Ga0104869_100424	All Organisms → Viruses → Predicted Viral	3923
Ga0104869_100808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2859
Ga0104869_101086	All Organisms → cellular organisms → Bacteria	2466
Ga0104869_101260	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2274
Ga0104869_107475	Not Available	806
Ga0104869_107984	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	772
Ga0104869_109555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	686
Ga0104869_112078	All Organisms → Viruses	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104869_100368	Ga0104869_1003682	F047508	MLGHRLVEGRVKYPYLRCIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0104869_100424	Ga0104869_1004245	F081510	MKLPKINTKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGVAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKVDTPMNQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSEMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQMHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0104869_100808	Ga0104869_1008082	F053092	MEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104869_101086	Ga0104869_1010862	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLTPVWSHDSEDAIDYFIYDTSVPKGHTLTAVRERETVVVQLLNIHRYVYYP*
Ga0104869_101086	Ga0104869_1010863	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAETMVTGALECDLAIDCSLEEVRPVFVDESDDSTEAGTTWSRYSLETLQKEGYILFKGSILPCEACGVDSRSSVKSLDLESLISGKVIEPVALPDVTRLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0104869_101260	Ga0104869_1012602	F043235	MDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104869_107475	Ga0104869_1074751	F076912	LGRSALVSDGKGSNADKVQDSDTSLLVSNKADKTAKENYLEDSEATPKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQESEGLRKSLQNSDAYFLVQQQALEDLS
Ga0104869_107984	Ga0104869_1079841	F094006	VQDLGRAVEPAGPPGALYESAVCVEAHIGELQTGGIACRGLFAFGGSNILAVAELGAEAPHAINMYDIALCKPLSELFAKELEYAFNFGA*
Ga0104869_109555	Ga0104869_1095553	F084342	IPIRRPFFAQALKKTLGQARSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0104869_112078	Ga0104869_1120782	F105377	RRPLLAPEEACERAREMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMMSERGWRLWQTSANVYVGGERKTVQAIRAHYRGD*