3300007122: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056

Overview

Basic Information

• IMG/M Taxon OID: 3300007122
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052610 | Ga0102683
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83558463
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	3
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F054110	Metagenome	140	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F058221	Metagenome	135	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F085821	Metagenome	111	N
F090517	Metagenome	108	N
F092232	Metagenome	107	N
F095632	Metagenome	105	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102683_100032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52451
Ga0102683_100050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	43782
Ga0102683_100213	All Organisms → cellular organisms → Bacteria	24619
Ga0102683_101297	Not Available	8870
Ga0102683_101809	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	7080
Ga0102683_102892	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4775
Ga0102683_104583	All Organisms → Viruses → Predicted Viral	3128
Ga0102683_105285	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2743
Ga0102683_105375	All Organisms → cellular organisms → Bacteria	2702
Ga0102683_106246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2355
Ga0102683_106987	All Organisms → cellular organisms → Bacteria	2117
Ga0102683_107545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1975
Ga0102683_107631	All Organisms → Viruses → Predicted Viral	1957
Ga0102683_112265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1275
Ga0102683_114217	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1113
Ga0102683_124241	All Organisms → Viruses	690
Ga0102683_125887	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	650
Ga0102683_129800	All Organisms → Viruses	566
Ga0102683_132500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102683_100032	Ga0102683_10003247	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLADAIDSMKKPQTN*
Ga0102683_100050	Ga0102683_10005037	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIVYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0102683_100050	Ga0102683_10005041	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLSDDTEVSFYKGLNVVYADINFTGGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0102683_100050	Ga0102683_10005044	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0102683_100050	Ga0102683_10005045	F036281	MITLIKIDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNSKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFHMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0102683_100050	Ga0102683_10005046	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID*
Ga0102683_100213	Ga0102683_10021312	F049707	VTEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQRDDVNHLTTIHFQPKIRNNEKELT*
Ga0102683_101297	Ga0102683_1012975	F054110	MNGRRYVVDTRQSWSKYDKPCKVYIVSRMYNEEEYKLAFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0102683_101809	Ga0102683_1018097	F085821	MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLRHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRTLLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0102683_102892	Ga0102683_1028923	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALEGNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0102683_104583	Ga0102683_1045832	F051213	MNLYKILGALILALSFVFTSCDWVANEPTIEGDSFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK*
Ga0102683_105285	Ga0102683_1052855	F054111	MNKPLESITHNEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILFLI*
Ga0102683_105375	Ga0102683_1053756	F049707	VSEYRSPHNDGHDPYILIWEYGSEVQQAEFSERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKEKQ*
Ga0102683_106246	Ga0102683_1062462	F063777	ALPPENNSFWMKLLLFLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKEKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0102683_106987	Ga0102683_1069872	F064818	MGERKKYPIPNNINGNTPKLYFINHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0102683_107545	Ga0102683_1075451	F041827	PPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0102683_107631	Ga0102683_1076311	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGK
Ga0102683_112265	Ga0102683_1122653	F058221	KMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0102683_114217	Ga0102683_1142172	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPRLQLSSVELRQTVWNGTLEYKSAKYGPYSVYLSFVSDSVVEVSTFTTTDLTAAHDLEAPCSYTMDDRILTLRTQGDLYLRVSIIDRSSWYLIRKEPSLLVFQANPGNPAAEATLTLRKKL*
Ga0102683_124241	Ga0102683_1242412	F105377	VRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD*
Ga0102683_125887	Ga0102683_1258871	F084342	HIVSGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0102683_129800	Ga0102683_1298002	F105377	MRDFDDLPLLTPEEAFERAWEVGGSAHPVFDRGYRVRGLNSWKAIETLLLQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGD*
Ga0102683_132500	Ga0102683_1325001	F080165	MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLKYTFTRYI