3300007089: Combined Assembly of 100 bp T18 (live) Gp0123698, Gp0123960, Gp0123961

Overview

Basic Information

• IMG/M Taxon OID: 3300007089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0123698 | Ga0102622
• Sample Name: Combined Assembly of 100 bp T18 (live) Gp0123698, Gp0123960, Gp0123961
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111617039
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073228	Metagenome / Metatranscriptome	120	N
F080090	Metagenome / Metatranscriptome	115	Y
F091072	Metagenome / Metatranscriptome	108	Y
F091989	Metagenome / Metatranscriptome	107	Y
F100040	Metagenome	103	N
F101218	Metagenome / Metatranscriptome	102	Y
F102132	Metagenome	102	Y
F105440	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102622_1013397	All Organisms → cellular organisms → Archaea	1447
Ga0102622_1014871	Not Available	1353
Ga0102622_1022234	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1034
Ga0102622_1032365	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	797
Ga0102622_1043546	All Organisms → cellular organisms → Bacteria	645
Ga0102622_1047007	Not Available	610
Ga0102622_1060747	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102622_1010251	Ga0102622_10102511	F100040	VLEKYLFSQMIEEILEDAMTNTRARPDLEKMISLGRKGIIDPDHMKRWGEFKKEWAEADLIIWNKLKERMATGDSGALELRPPLSPSEKEWAKKIITQAEERNLC*
Ga0102622_1013397	Ga0102622_10133971	F101218	SISMSKRTSKPAPPRVQKPPPLPSIAELIAEARELGEDDIADAFEKIRYLESPSGQRAIERRKRGYD*
Ga0102622_1014871	Ga0102622_10148714	F073228	MAITIGDIMDINSSKYGEFLYKIVMVFPHNMEVDKTELARLIKISNNTLTFERKNGENFTIDERDIEHMDLFRSPNYKGGE*
Ga0102622_1022234	Ga0102622_10222342	F091989	MTLSAYARDIINRARVNCYATDAAKAGDALIRPYGEHDEQKTTLKSLQVSTMALCWVNSEGKLVPFDEAEFAGIQKEIAVLQAKIDHNTKILNELDSKVAELGLTEFSLAKLKGQKEKLRGQIAQIRSEESDALRHKWEAVVSLGGNRGTYDALPEVIEARAKAAAQIEPLEGEIKALNAQIRSLEAILSKFKR*
Ga0102622_1032365	Ga0102622_10323651	F080090	WSEPLRVDNELSNINSWREVYEKDEVALRPSIQDISSI*
Ga0102622_1043546	Ga0102622_10435462	F102132	METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDREKEKEIDPMEDGDPTYYKRLE
Ga0102622_1047007	Ga0102622_10470072	F105440	MRSAEAKDRSISYRRLKADRSIALLYNPATRDGRFSTKLAARAGLADGYYEAFPHIEYAQTLAENNANLQKYGWPEYEGI*
Ga0102622_1060747	Ga0102622_10607471	F091072	MAGTVKETAMPVRGEAEEEIKALLKGTDVAWTQYKRDHGTRVTSAKELDAFLDSL*