3300007079: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 3300007079
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052655 | Ga0104033
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95569843
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061926	Metagenome	131	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104033_100102	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	60242
Ga0104033_100156	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	45737
Ga0104033_100373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	24939
Ga0104033_102239	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6038
Ga0104033_111573	All Organisms → cellular organisms → Bacteria → Proteobacteria	1527
Ga0104033_130275	Not Available	595

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104033_100102	Ga0104033_10010230	F081454	MKVFKLVLLLFITSVSLVFGQEKRYFFKYEFQPNSKYLIKYKTDMYGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVENMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0104033_100156	Ga0104033_10015627	F061926	MIKTAKHIKTFLASVLMLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPILS*
Ga0104033_100373	Ga0104033_10037331	F067846	MESLQAQWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKENISNCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRKGFILND*
Ga0104033_100373	Ga0104033_10037336	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0104033_102239	Ga0104033_1022394	F090516	MKSNLSVELFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLENDAETGDYYKEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0104033_111573	Ga0104033_1115732	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAIAHFFHAERGNAAAAAFDGAFGEDIADCHAKDDNDKNAESEEEGFHVCIPEG*
Ga0104033_130275	Ga0104033_1302752	F077405	QGRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKNFFDWLKIVQK*