3300007057: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic

Overview

Basic Information

• IMG/M Taxon OID: 3300007057
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124809 | Ga0101644
• Sample Name: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72073849
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	8
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004842	Metagenome / Metatranscriptome	421	Y
F005351	Metagenome / Metatranscriptome	403	Y
F017577	Metagenome / Metatranscriptome	240	Y
F050391	Metagenome / Metatranscriptome	145	N
F065466	Metagenome	127	Y
F076157	Metagenome / Metatranscriptome	118	Y
F079320	Metagenome / Metatranscriptome	116	Y
F087327	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101644_1004436	All Organisms → cellular organisms → Bacteria	1614
Ga0101644_1006143	Not Available	1360
Ga0101644_1012910	Not Available	941
Ga0101644_1014733	Not Available	883
Ga0101644_1025386	Not Available	680
Ga0101644_1026632	Not Available	664
Ga0101644_1027304	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	655
Ga0101644_1031251	Not Available	610
Ga0101644_1032217	Not Available	600
Ga0101644_1041852	Not Available	521
Ga0101644_1043758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101644_1000004	Ga0101644_100000425	F017577	MFPTSSLVSQSGVTTRRQWGSRPSRATLELEFSNITDANASALLSAYHSAEGSFDSLTLPDIVFNGTDATLKTWLSGSATGAGLVWSFTEGSPPTVNSVARGIHEVSISLTAELR*
Ga0101644_1004436	Ga0101644_10044364	F050391	MKLKDPIVLTDELKTEKFRNEKLHKKCNKLLKQSKEQQEEISDLNEYIDSLESQIADYKRRFVPDFDMLSKGGAEVPISDLKIMSEKAKRSMAKRFERKYGEEWVKVNILENKNLK*
Ga0101644_1006143	Ga0101644_10061431	F076157	KGIGGIFFSKNQTTANATKVATISGGIATDKFLPLL*
Ga0101644_1012910	Ga0101644_10129101	F087327	LPSPSSINFHGPDIFGNEFFTKKVEAFSSHKIFGDLKSLLFSAQTESF*
Ga0101644_1014733	Ga0101644_10147331	F065466	TVMSVLLCLLSALVEVNSQTAPYVSFMGANLTNHSYVNLTLVGDARDGRDSVQCHTDLVTCCNSTQGADRGDWYFSNRSRLNFNNDSIDILLYQVRRAQQVDLRRKNISDVSGMYRCVIETNAVHNDSGRETVYVGLYASGGECTHMCI*
Ga0101644_1025386	Ga0101644_10253861	F065466	LVEVHSQTVPYVSFMGTNLPNHSYVNFTLVRDAMDGSDSVQCHTDLVTCCNRTHGDDRGDWYFPNKERLNFWEDPGDIYEQRRAQRVDLRRRNNGDTSGIYRCTIETNAVHSDNFSDTTTRETVYAGLYASGGECAYGEEFEYSQ*
Ga0101644_1026632	Ga0101644_10266321	F065466	LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDAAGSSVQCHTDMDTCCGPAQGPDRGDWYFPNGDRLQFSNGPDDIYEQRTAQQVDLRRRNNGDTSGIYRCTIETNAVNDDDGRETVYAGLYASGGEFKHCVHMYI*
Ga0101644_1027304	Ga0101644_10273043	F079320	SWTQFYQEVGNKEQIRKCQTQIAALKKAYNETKTKK*
Ga0101644_1031251	Ga0101644_10312511	F065466	LSALVEVNSQTVPYVSFMGANLINHSYMDLTLVGDAWNGSDSVQCHTDLLTCCSKAQGAHRGDWYLPNGSRLNFNVHPGDIYENRETQQVDLRRRNNGDTSGIYRCTVETNAVHSDNASGTTTRETVYAGLYASGGKRTHMCV*
Ga0101644_1032217	Ga0101644_10322171	F065466	LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDALDGSDSVQCHTDLNTCCSMDQGDDRGDWYFPDGTRLGFSGTSEGAYERRQLQRVDLRRIESSTSGMYRCDMDTSRVHSHNNSDNTTRETVYVGLYARGGGCDIVCVEYH*
Ga0101644_1041852	Ga0101644_10418523	F005351	MYHINNPSNWSWSRAFDEVNRTIRKAELEQQIMNHLDNYSGDPKWTNFTEDQKDDHYTILTELL*
Ga0101644_1043758	Ga0101644_10437581	F004842	KAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAINIPTHNNPVNSGAIVFLINKIIDITKTTTVINASKLLLTTAIKFIRDLFNSIYPKTIFQKSLIRIIFFLKTF*