3300006958: Marine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', co31is

Overview

Basic Information

• IMG/M Taxon OID: 3300006958
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124749 | Ga0101660
• Sample Name: Marine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', co31is
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12073252
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F008031	Metagenome / Metatranscriptome	340	Y
F011766	Metagenome	287	Y
F017657	Metagenome	239	Y
F025141	Metagenome / Metatranscriptome	203	Y
F033840	Metagenome	176	Y
F041143	Metagenome / Metatranscriptome	160	N
F047732	Metagenome	149	N
F051941	Metagenome / Metatranscriptome	143	N
F053330	Metagenome	141	Y
F056174	Metagenome	138	Y
F057290	Metagenome	136	N
F064728	Metagenome / Metatranscriptome	128	Y
F067211	Metagenome / Metatranscriptome	126	N
F067755	Metagenome	125	N
F076163	Metagenome / Metatranscriptome	118	Y
F085224	Metagenome	111	N
F087138	Metagenome / Metatranscriptome	110	Y
F092196	Metagenome	107	N
F104985	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101660_100145	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	3684
Ga0101660_100643	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1601
Ga0101660_100654	Not Available	1586
Ga0101660_100774	Not Available	1454
Ga0101660_100884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1340
Ga0101660_101016	All Organisms → cellular organisms → Bacteria	1231
Ga0101660_101097	All Organisms → Viruses → Predicted Viral	1148
Ga0101660_101681	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	907
Ga0101660_102458	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	737
Ga0101660_102820	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	684
Ga0101660_103026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	662
Ga0101660_103208	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	644
Ga0101660_103212	Not Available	644
Ga0101660_103363	Not Available	630
Ga0101660_103374	Not Available	629
Ga0101660_103410	Not Available	626
Ga0101660_103740	All Organisms → cellular organisms → Bacteria	602
Ga0101660_103838	Not Available	594
Ga0101660_104317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	565
Ga0101660_104489	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	553
Ga0101660_104968	Not Available	530
Ga0101660_105090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101660_100145	Ga0101660_1001452	F025141	MIQCEYCTKGFIETANGLAEKTFHELLHGAKVVNK*
Ga0101660_100643	Ga0101660_1006432	F047732	MQRGYAICTTDLKRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIVSRAAKKFEGMPETKIVNVALLYNRIDKQNELSNL*
Ga0101660_100654	Ga0101660_1006542	F085224	LLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGKDSAPDPNDSVNHEALHYWLEKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA*
Ga0101660_100774	Ga0101660_1007741	F085224	LLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGADSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0101660_100884	Ga0101660_1008842	F041143	MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERLPKSLIEKSDFKKSS*
Ga0101660_101016	Ga0101660_1010163	F017657	MMMMDNNRKEALDKATKAKQKMAVEAEMMKQIQPTVPEVTAENIDMQPAIIPKPKPEGPVVGANVFNPGKLYPGISGTSKLAANWN
Ga0101660_101097	Ga0101660_1010973	F033840	MSVFDYRLNRREQLVRKGEPIDNSVDFSGKTSPDFRNKFIAKMKDTNKMYQRESPGQFDDQRADVVRNNLTAQADDLGQFNDPTDQIKSDAFLAKFRRSMLVNEEEKPNRQGILQYMQGDPKGPPVNGQFPTDGVKVS*
Ga0101660_101681	Ga0101660_1016811	F076163	PDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGLPSYPASPITADLGGTTTELLLLGPDNGGNPIGVPATQALGNAAASSTLTCASSLFTQGSENVTLAKIPFWTSVTTAGIDDQDAANAMLYKVTADTTFKVYNVDAVTGTTVSGDGVFISADDSTAGRAAYIVCRVNYLRPAKAVTWDDVSSFVDFASQVGGTDS*
Ga0101660_102458	Ga0101660_1024582	F076163	ADRPAYIYSASICIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAITTAFSSGTIAQGESDVSVAEAPFWTAVTTSGIDDQDAANAMMYRVTADTTFKVYNVNAVTSTSVDGDGVFISSDDKDAGKAAYIICRVNYLRPAAATTFMDIVGSLDFASQVGGSDS*
Ga0101660_102623	Ga0101660_1026231	F011766	PIDICFYLVNVGTVSNTNQFFPLFVSSVEAVGSEVVYSLTDKEDLPFINHPVLQAGTNLGSANSNKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY*
Ga0101660_102820	Ga0101660_1028202	F053330	MAGTSIYSVYRRTARAAAKQQVVKKTSSVDVDKARSDFAY
Ga0101660_103026	Ga0101660_1030263	F056174	KNKNTKRKGLSGGVRYGPPPKKGPNPQGINVSDAKKLLRKSSTKA*
Ga0101660_103208	Ga0101660_1032082	F067211	PVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDRAFELAVESVADGELSSAEIKKLAVHMAQSWLPGAAAEQVRLLEQNGMPLEQRKAAEDITAKVNTAS*
Ga0101660_103212	Ga0101660_1032122	F057290	FYKNFEKEQERTRKAAERMALLGYGLPWTGNKDIEFGQRNAPEEVAQFDPTLVTMKLTDTIRRDEGELNRDGRILNNAATTLMSMQKVLNLDFDLIEDVRIGLLTQPLTDFTPDFQFGEVEGGTYLNGERITGAGVSSMDCSTYNPGVEQSINVDAGLYIN*
Ga0101660_103363	Ga0101660_1033632	F051941	MATSFKNMIYDLTPTTSEKTVYGVPTDSHSIINAFYVNNTDPFSSIFVEVRLDRGPNRPYVASTTSLFSVELASNQYLNLLTGPLVLEGGDKLVFTTNTTGRVQGTIAAMQVNREDQETTPIG
Ga0101660_103374	Ga0101660_1033741	F000479	EVLEKAHQSIASVSKRNKQAIIDSYGRALTMKKVIDDFIKVNRNLIIDMGIGENANLLHGKDYSLHVSQKLSVKVDSNLVKEKLGELEYHKCKVPTQYKQIQALPKEEATVRRNKKATVEEVADFRITA*
Ga0101660_103410	Ga0101660_1034101	F085224	YSIWSGVMLELLEMGVPVFYPSKILLKRWHERYGMVYQRSSGGCRSAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSKPA*
Ga0101660_103740	Ga0101660_1037403	F067755	AITSGLAAFTGVIKSLNGFNEKIQRRFNKLQDEINRVEDDMIRGYVLKQDFIREMDVVHQKLDRILELMIKQNSK*
Ga0101660_103838	Ga0101660_1038382	F087138	KPKLIGSGCSDSGSLSVVDPTHIGVSETGKIRLPAVGLGTVFETEVGDGEFQVYELRDRTGRLRRIVIDLE*
Ga0101660_104045	Ga0101660_1040451	F104985	YDILNETAGTAVLDAIASDMENMDKKEVDTDMLANAADSMFTALMWNAGAATLTPVITKSLGKVGRLAIGAKSKDAKELVNIARDKGLPLPMVMTAQEGTGLLGGFANKYFKVLGIMPFINGIGREALQGAEQKAGREYLNNSVLTYGPLIKTGMLSATIWKQADEAFKQNSNLINTSYKAFDTLADTIGNPK
Ga0101660_104317	Ga0101660_1043171	F064728	DVPKIDAKDITPEQITERMQQLDASVPAPIYDEKTIPKNNYETLFAQDFSGSSGDLQTDNNAVTFLSTATQKEAEVDVEEAPIEEQEKKLVMEDLQLEDPVASPPTAPTLPNTGQVTSQQVADLFPNDPTSIAAARRREAGRV*
Ga0101660_104489	Ga0101660_1044891	F076163	NGGVPFGVPSTQQNGLAAASSSIQASSSLFAQGLTDTTTGDLPFWTVVTGGGITAANAANSMMYKVTADTTFKVFNVDAIANTTVSGDGVFISQADSDAGRAAYILGRVNYLRPAKGVSWNDIQGFIDFPSQVGGGDA*
Ga0101660_104968	Ga0101660_1049683	F092196	MNTYRIKIKQVYVETVFAEAESKEDAIQMVWSDDCRLEGSEYKSAEADIQSVEEV*
Ga0101660_105090	Ga0101660_1050901	F008031	MATYKSDAGAILEPGNQINRLSSFNHEGVKGWPGVEAFEQIGFVKINNASADKASFKSFDITVPSPDRRVSDRVRDDRTTLVVKASSARPAYVYGASLALAQDDPSGGLPSFPASPITADLVGTNTEVLLLGPNNGGSPFGIPSTQQNGLAAATSSIAFSGTTIAQGTGSV