Sample 3300006933

3300006933: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300006933 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0103008 \| Gp0088355 \| Ga0081247
Sample Name	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	62027540
Sequencing Scaffolds	82
Novel Protein Genes	91
Associated Families	66

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	56
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Gymnopus → Gymnopus luxurians	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora ramorum	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → Candidatus Latescibacter → Candidatus Latescibacter anaerobius	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas extremaustralis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → Myxococcus stipitatus	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → Treponema azotonutricium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira wolffii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Amazon Forest, Brazil
Coordinates	Lat. (^o)	-10.0	Long. (^o)	-62.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001418	Metagenome / Metatranscriptome	698	Y
F001758	Metagenome / Metatranscriptome	640	Y
F001975	Metagenome / Metatranscriptome	609	Y
F003269	Metagenome / Metatranscriptome	496	Y
F003427	Metagenome / Metatranscriptome	487	Y
F004377	Metagenome / Metatranscriptome	441	Y
F006338	Metagenome / Metatranscriptome	375	Y
F006838	Metagenome / Metatranscriptome	363	Y
F009149	Metagenome / Metatranscriptome	322	Y
F009273	Metagenome / Metatranscriptome	320	Y
F009343	Metagenome / Metatranscriptome	319	Y
F009409	Metagenome / Metatranscriptome	318	Y
F011643	Metagenome / Metatranscriptome	288	Y
F011651	Metagenome / Metatranscriptome	288	Y
F012593	Metagenome / Metatranscriptome	279	Y
F014482	Metagenome / Metatranscriptome	262	Y
F015442	Metagenome / Metatranscriptome	254	Y
F016001	Metagenome / Metatranscriptome	250	Y
F016975	Metagenome / Metatranscriptome	243	Y
F017118	Metagenome / Metatranscriptome	242	Y
F017246	Metagenome / Metatranscriptome	242	Y
F019606	Metagenome / Metatranscriptome	228	Y
F022151	Metagenome / Metatranscriptome	215	Y
F022644	Metagenome / Metatranscriptome	213	Y
F023129	Metagenome / Metatranscriptome	211	Y
F023644	Metagenome / Metatranscriptome	209	Y
F026580	Metagenome / Metatranscriptome	197	Y
F026919	Metagenome / Metatranscriptome	196	Y
F027763	Metagenome / Metatranscriptome	193	Y
F030582	Metagenome / Metatranscriptome	185	Y
F031882	Metagenome / Metatranscriptome	181	Y
F032287	Metagenome / Metatranscriptome	180	Y
F033058	Metagenome / Metatranscriptome	178	Y
F034947	Metagenome / Metatranscriptome	173	Y
F036115	Metagenome / Metatranscriptome	170	Y
F038115	Metagenome / Metatranscriptome	166	Y
F039955	Metagenome / Metatranscriptome	162	Y
F041780	Metagenome / Metatranscriptome	159	Y
F043243	Metagenome / Metatranscriptome	156	Y
F043491	Metagenome / Metatranscriptome	156	Y
F044324	Metagenome / Metatranscriptome	154	Y
F046210	Metagenome / Metatranscriptome	151	N
F052160	Metagenome / Metatranscriptome	143	Y
F052443	Metagenome / Metatranscriptome	142	N
F052787	Metagenome / Metatranscriptome	142	Y
F054015	Metagenome / Metatranscriptome	140	Y
F054425	Metagenome / Metatranscriptome	140	Y
F055098	Metagenome / Metatranscriptome	139	Y
F056191	Metagenome / Metatranscriptome	138	Y
F060922	Metagenome / Metatranscriptome	132	Y
F063173	Metagenome / Metatranscriptome	130	Y
F076940	Metagenome / Metatranscriptome	117	Y
F077054	Metagenome / Metatranscriptome	117	N
F079670	Metagenome / Metatranscriptome	115	N
F084298	Metagenome / Metatranscriptome	112	N
F089313	Metagenome / Metatranscriptome	109	Y
F090914	Metagenome / Metatranscriptome	108	N
F091826	Metagenome / Metatranscriptome	107	Y
F093662	Metagenome / Metatranscriptome	106	Y
F100618	Metagenome / Metatranscriptome	102	Y
F102644	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0081247_1000210	Not Available	603	Open in IMG/M
Ga0081247_1000880	Not Available	563	Open in IMG/M
Ga0081247_1001025	Not Available	578	Open in IMG/M
Ga0081247_1001435	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1113	Open in IMG/M
Ga0081247_1002058	Not Available	695	Open in IMG/M
Ga0081247_1004781	Not Available	697	Open in IMG/M
Ga0081247_1004964	Not Available	712	Open in IMG/M
Ga0081247_1005168	Not Available	764	Open in IMG/M
Ga0081247_1005296	Not Available	733	Open in IMG/M
Ga0081247_1008047	Not Available	509	Open in IMG/M
Ga0081247_1010034	Not Available	708	Open in IMG/M
Ga0081247_1010537	Not Available	692	Open in IMG/M
Ga0081247_1012393	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Gymnopus → Gymnopus luxurians	622	Open in IMG/M
Ga0081247_1013137	Not Available	781	Open in IMG/M
Ga0081247_1014048	Not Available	581	Open in IMG/M
Ga0081247_1016333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
Ga0081247_1017860	Not Available	610	Open in IMG/M
Ga0081247_1018922	Not Available	591	Open in IMG/M
Ga0081247_1026674	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
Ga0081247_1026734	Not Available	561	Open in IMG/M
Ga0081247_1038970	Not Available	654	Open in IMG/M
Ga0081247_1043253	Not Available	842	Open in IMG/M
Ga0081247_1048877	All Organisms → cellular organisms → Eukaryota	1032	Open in IMG/M
Ga0081247_1049183	Not Available	715	Open in IMG/M
Ga0081247_1057777	Not Available	614	Open in IMG/M
Ga0081247_1058391	Not Available	626	Open in IMG/M
Ga0081247_1060756	Not Available	643	Open in IMG/M
Ga0081247_1060916	Not Available	729	Open in IMG/M
Ga0081247_1061760	Not Available	500	Open in IMG/M
Ga0081247_1064855	Not Available	517	Open in IMG/M
Ga0081247_1066595	Not Available	746	Open in IMG/M
Ga0081247_1070066	Not Available	760	Open in IMG/M
Ga0081247_1077901	Not Available	504	Open in IMG/M
Ga0081247_1084067	Not Available	582	Open in IMG/M
Ga0081247_1084832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
Ga0081247_1091717	Not Available	639	Open in IMG/M
Ga0081247_1094472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
Ga0081247_1124223	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora ramorum	581	Open in IMG/M
Ga0081247_1142573	Not Available	501	Open in IMG/M
Ga0081247_1145950	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
Ga0081247_1147961	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → Candidatus Latescibacter → Candidatus Latescibacter anaerobius	540	Open in IMG/M
Ga0081247_1149342	Not Available	1041	Open in IMG/M
Ga0081247_1149959	Not Available	524	Open in IMG/M
Ga0081247_1150837	Not Available	718	Open in IMG/M
Ga0081247_1152147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum	524	Open in IMG/M
Ga0081247_1159694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
Ga0081247_1166019	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1026	Open in IMG/M
Ga0081247_1166465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	919	Open in IMG/M
Ga0081247_1166931	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
Ga0081247_1168373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas extremaustralis	666	Open in IMG/M
Ga0081247_1169671	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
Ga0081247_1171191	Not Available	796	Open in IMG/M
Ga0081247_1172275	Not Available	508	Open in IMG/M
Ga0081247_1175319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
Ga0081247_1175663	Not Available	518	Open in IMG/M
Ga0081247_1175673	Not Available	532	Open in IMG/M
Ga0081247_1176478	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → Myxococcus stipitatus	642	Open in IMG/M
Ga0081247_1177584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
Ga0081247_1178504	Not Available	550	Open in IMG/M
Ga0081247_1180513	Not Available	731	Open in IMG/M
Ga0081247_1180829	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → Treponema azotonutricium	527	Open in IMG/M
Ga0081247_1182758	Not Available	617	Open in IMG/M
Ga0081247_1185146	Not Available	596	Open in IMG/M
Ga0081247_1188126	Not Available	689	Open in IMG/M
Ga0081247_1191290	Not Available	674	Open in IMG/M
Ga0081247_1192164	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
Ga0081247_1192260	Not Available	696	Open in IMG/M
Ga0081247_1193485	Not Available	579	Open in IMG/M
Ga0081247_1193960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	728	Open in IMG/M
Ga0081247_1194547	Not Available	532	Open in IMG/M
Ga0081247_1195544	Not Available	625	Open in IMG/M
Ga0081247_1197364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
Ga0081247_1197385	Not Available	631	Open in IMG/M
Ga0081247_1198004	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
Ga0081247_1199514	Not Available	534	Open in IMG/M
Ga0081247_1200292	Not Available	606	Open in IMG/M
Ga0081247_1201550	Not Available	634	Open in IMG/M
Ga0081247_1202044	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira wolffii	515	Open in IMG/M
Ga0081247_1202048	Not Available	749	Open in IMG/M
Ga0081247_1202645	Not Available	710	Open in IMG/M
Ga0081247_1203896	Not Available	711	Open in IMG/M
Ga0081247_1203936	Not Available	632	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081247_1000210	Ga0081247_10002103	F001758	VTGQRLSQAGWLSPSKAGSKGSGAEAEFTSSSGEVRASLVNAKKGLSDEER*
Ga0081247_1000880	Ga0081247_10008801	F038115	DFQPCSPPACTVLNIANGTVGRLASLLPDNRFLRLPDQCFKTRRNFCSRLGPDARNGLSLARNGCSFRSFHSEVNTPDLPLRFQLAASSARSALLLRYPFRLAPVRAASLLLARCSLYSSYVDRISNLHSL*
Ga0081247_1001025	Ga0081247_10010252	F043243	VTDSRSEGAKGRCEKPTSDRKYEQADLVALIRDRRKTVAGSQQESVRETCLRRSVPSMPAGGKAANRITW
Ga0081247_1001435	Ga0081247_10014351	F012593	MSAQLDSLIHKSKDLEMQIEQLTAELTRLHGEIAERMGDRHEYYGHGVVAKKWARVHWEVNKDLLLDELSSEALDYCKEVVLTKTKLDQAVKAGYLPPRLYDRAVKREQLGWNVNLKILEPPERALDWDGEEER*
Ga0081247_1002058	Ga0081247_10020581	F001346	VKTFRKVGDAKNGTADLQMKGNLRARGETRGIGQTRCQKMAADPKLSGQDAEKRSQTCLDLVRKPVAQPPAQAS*
Ga0081247_1002116	Ga0081247_10021161	F000203	GMGVRRALFPMLALGASHYGAASFPTLFSTASGVIGLVAGPSSDLHH*
Ga0081247_1004781	Ga0081247_10047811	F033058	VADLTQVVKTRTNSHRRVFAWFADRWRNHQPKQAEKPHSKFSRREALNGPATRPITPLAVENSVGKLAALQCGAPNASTGKRAWRTPIPHLVP
Ga0081247_1004964	Ga0081247_10049641	F001233	SRIIPGDWGKDAAGWLAHPLKNRIARFGGRGRIHQFLWRRSRAVGNAKRNCAVTND*
Ga0081247_1005168	Ga0081247_10051681	F001758	VTGERLSQAGWLSPSKPGAKVSAAEAGFTSPSGDVRASPVNAKKGLSDKER*
Ga0081247_1005296	Ga0081247_10052961	F054425	LPDAILHGKRSCRPRSRAVQDVAIAGLLSEAFQLASTGGRYTGLRTKPRHVCDSAPRLDYLARGQPPLLTARSPRATGLAS*
Ga0081247_1008047	Ga0081247_10080471	F016001	VFSRRLDPIPSWACLLQVFALDAVTTPSRRLSLVALVATLSSHCRRQPSAIRHRAWLASLEAAYLLEV
Ga0081247_1010034	Ga0081247_10100341	F001758	VTGERLGQAGWLSPSKAGSQGSGAEAGFTSSSGGVRAPSVHAKKGLSDEER*
Ga0081247_1010034	Ga0081247_10100342	F003269	MVKTRKANRRRVFTWFVSRWRNHQPKRAEKPHSKANGRKTLDGPATRPKTPLAVENSVGK
Ga0081247_1010537	Ga0081247_10105371	F000817	VSRIIPGDWGKDESGWLAHPLINRTARSGSGGRIH*
Ga0081247_1012393	Ga0081247_10123931	F056191	MLFFSIFNNYVYEARFRHELTAEMSKTLSSGGSMHASVKLEGIDGRAPQERVEHVA*
Ga0081247_1013137	Ga0081247_10131371	F060922	VSRIIPGDWGKVESGWLVQPLARPEAKVMAGGRIHQFL*
Ga0081247_1014048	Ga0081247_10140481	F022151	LDNRPNGTERVWNIDPLLVLLKTAGSGERKAIGRFDSVSLSAGIRVSALIAKGQKALNGSEDSRNGRGREEGTGQRV*
Ga0081247_1016333	Ga0081247_10163331	F001975	STSTSTQQELQDQFLSIVSKSQEMALDAIKSMVDTVQTITPKIPAVDVPFADRLPKPQDVVANGYDFAQKLLSSQRKFADEVVKATAPLLPGNGDSK*
Ga0081247_1017860	Ga0081247_10178602	F039955	STKSYTFRRDVVRGNFLLPEIPDQGILIAVLRATQQFYLPDLSDEDFDNLHQMLILIDDVILGGLKDPSNWVLPRGFSDIPFVKSRLDKNYPIEQILEYMLAATRLYVWLYQHESETVSELIPHLLELEESFESLRTRNGVVDSSQGSALKY*
Ga0081247_1018922	Ga0081247_10189221	F023644	MLVTAFRSPATASAFADSIPGSMLPTCHFASWQTRFGCPLTFQLHCRLRLAPLPAASMLQARCSLAGLLDDRFLRSPLPFRTFTSLRIKAFNRICCLSVRLPNPPDLLSLPAAGFISVFRLRIIVLVRYVSGGLLFLK
Ga0081247_1026674	Ga0081247_10266741	F015442	VSERPLPETGFEQVVRAGGLGSVNPRSLKNGSGESTRNRPGILFAMLGAEYAGGERGCESGHLE
Ga0081247_1026734	Ga0081247_10267341	F019606	VPRSELLTKNERVIFKTLICSGQKPRQGAMKKVPRFSRMPCSNRACRLESELLKGSLG
Ga0081247_1026923	Ga0081247_10269232	F001418	RIVGLVAEAQFTSSSGDVRASLVNAKKGLSDQERNRETAPSRVK*
Ga0081247_1038970	Ga0081247_10389701	F063173	VPRVWPLNSQVAFLPQFSGTFFDIAEVSKGFHGSCLDRVSFPVRPLTLFRLSAFFVWLIPFFFGNARVVRPVLIHSSNRLPSGNCDSLGFETSPSYLTEFGTVSNRSSSLSPFFAFADSARTLPEELVNSASPFEPFDSLSEELSQPA*
Ga0081247_1043253	Ga0081247_10432531	F011643	VRDKPLKGKPWTWQRDETSPQRQLAEKTVEDVRNVEDGT*
Ga0081247_1048877	Ga0081247_10488772	F046210	ANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNGAEAAVKSRNVNSRHPSSIEREIV
Ga0081247_1049183	Ga0081247_10491831	F006338	VVLENGILSGPATRPKTPLAVENSVGKLAAAAMWRQMPARERELGELP
Ga0081247_1056172	Ga0081247_10561721	F000203	PVLALGASLCGAASFPTLFSTASGVFGLVAGPPSDLHH*
Ga0081247_1057777	Ga0081247_10577771	F023129	VKRRDPWHRANVPTKSEADPALRGTDADKNSQTCLDLVCKP
Ga0081247_1058391	Ga0081247_10583911	F026580	MRNRFEPNQVAQEGFESERIAVTQRVFGCYCVSARAGDSGGLKQEVSQRKDAERRNKVSARTGKDTRPRQDP*
Ga0081247_1060756	Ga0081247_10607561	F001233	VSRIIPGDWGKDESGWLVHPLINRIVRFGSGGRIHQFLWRRSRAVSNAKRNCAMRSAIEETAPSRFK*
Ga0081247_1060916	Ga0081247_10609161	F001233	SRIIPGDWGKDESGWLVHPLINRIVRFGSGGRIHQFLWRRLRAVSNAKRD*
Ga0081247_1061760	Ga0081247_10617601	F000817	KELRWAAVINRLTLNFSRIIPGDWGKVESGWLAQLLLSRTARFGSGGRIHQFL*
Ga0081247_1064855	Ga0081247_10648552	F056191	VYEARFRHELTAEMSKTLSSWGSMHASVKLEGIDGRAPQE
Ga0081247_1066595	Ga0081247_10665951	F001024	MTPLAVENSVGKLAAPIRRRPMPARERELGELPSP
Ga0081247_1070066	Ga0081247_10700661	F006338	VVLENGMLSGPATRPKTPLAVENSVGKLAAAAMWRQMPARERELGELPS
Ga0081247_1070066	Ga0081247_10700662	F001758	EKLGQAGWPGSSESGSKETKGEAEFTSSSGGVRAPSVYAKKGLRNEERLETVPNSVK*
Ga0081247_1077901	Ga0081247_10779012	F006338	MLSGPATRPKTPLAVANSVGKLAAAEMWRQMPARERELGELPS
Ga0081247_1084067	Ga0081247_10840671	F015442	VSGQSLRESERPLRETSSGQVIRAGGLGSVNPRPSKGGGGESTRIRPEDLFAVLNAEYAGGGRGCESDHLE
Ga0081247_1084832	Ga0081247_10848322	F001975	STTQQELQDQFLSIVSKSQEIALDAIKSMVDTVQTITPKIPAVDVPFAGKLPRPQDVVASGYDFAEKLLSSQRKFADEVVKAAAPLLPGNGDSDSK*
Ga0081247_1091717	Ga0081247_10917171	F001418	ESGSKGSKGEAEFTSSSGSVRALSVNAKKGLRNEERLETVPNSVK*
Ga0081247_1094472	Ga0081247_10944722	F093662	MPKKLKISGPGAADFLTAPGGTDFPETDASKGTAQATRGEGLLDNAEELEPDLEAPDPALQRER
Ga0081247_1124223	Ga0081247_11242231	F084298	FDTPLPNAEAAKKAQMATISGCVTRDAASGGHPTISSNGIAYRLMGKSDNELQRYLGKRLEVTGTLDSGSTGARATSGRTDDITGAPKDQTATGGQSDVTATGAARDNTAPDTQGAAVAKDAIPLATDKGTTADFTARLQVKTMKMVAPNCLH*
Ga0081247_1142573	Ga0081247_11425731	F026919	VGSFMNNQILGVRGGGYVTSNFEIGGNWSWNNHFQPKSDNTTAAFAGDLGFPQAAVRSNLWEVEFTYHFGSRGVFGHAVRPYLVAGGGGITTNMKNGDEFVLNNTFIDVPGVSTATLKAAQANGTLQAFVPGANLSNGVAIASFPPGAAVPTGSTVIVANDVLRDHV
Ga0081247_1145950	Ga0081247_11459502	F052160	RCFCETRESRYRKPMKSFWITIRMGRSDIRDSEIEDESLQNWLQKKLEHATSLLGGNGQVSLERVDPLRVDVDLNFTVRADSVSDVMERFRDDFRALGSITQGIEISETKNYKLCFPRINGEQFPVCVRIDPDTGHPIYTED*
Ga0081247_1147961	Ga0081247_11479611	F031882	DCADLLTTTALTGSLDVYGVGNACTYSNDVFNRNPALSEAVEGAFYENVGLNGPYVSDVVKTAVPLRNWIAATSGYEIEHLWSRYCETDGGRLGYYYYMLNHVFNTICTITGAPPTTLDNPQSNRAYTNFMKIGNSVMRQGPTVVRFGVAKAGRVQVTIFDVTGRKIRNLADRVFQAGE
Ga0081247_1149342	Ga0081247_11493422	F036115	ALLGMELDGTLTIGGLRRLSRLMAFQPLEVIVAATHGRERISSDPAFDVLRAWVNRPCPVRHTPKRPERRRIGVGYRDKGSLLPSHLKGRQLPEENAIYLGEKKEWLSSYSQQIYIWVQDWGYLMHHIGDGWWAPDNRLRQHMNAGGARLT*
Ga0081247_1149959	Ga0081247_11499591	F041780	SPTGMHGLNMAFRMTGPIFLCSPRSPFGKSASTLRTRPASHSNRNRHLETAFVLPCSDFPYPELRGRLKRSQPASSITLLGPIQSRSVPNSLPAAFGVRRGHGHETRFLLAARQSRPILEPPLPFGVSPPPDHCAQSDSDREVYLSRMPDFPLLPERLLVANLTLGSTFQVRYI
Ga0081247_1150837	Ga0081247_11508372	F091826	VDPCEMQRKLSQWATDDPTKKFVDLYSLLCKEVWLRV
Ga0081247_1152147	Ga0081247_11521472	F089313	GSSGGRMHLVASGDDLRPLATRISEEVRQQYLLGFAPSGRGDVKYRIVFVSVARPGSWVVRTRRGYRGTAPGGS*
Ga0081247_1159694	Ga0081247_11596941	F052787	MKLKWAVNLLAASCLITSPVLLAQDTTKQDKSAEVRNITGCLSKGDSAGEFKVTASDGSNWEVKSKTVKLSPHVGHTVTVTGEVWHPDMHGAKEKTKSAVDADAKEHGHLNVTKVEMVSDSCK*
Ga0081247_1163628	Ga0081247_11636282	F027763	SEGAESAYTSSDGLMKLSLNHNLVKQGRTRHLLRFDHSKITADPYISTQNVRVTTAMYIVFDVPPAGYTNTEVLAVYTGFKTLFTASSDAVITKLLGGES*
Ga0081247_1166019	Ga0081247_11660191	F004377	GAAFRVAFVPYGEGDDAKPAGERSFRHLQEVRAFLKVLGVGADYIKDVLRQLTAGRSAWVPNVAISEKVLRTAGFVSIGNLARSS*
Ga0081247_1166465	Ga0081247_11664651	F100618	DITVYKGDDIMPALATYPAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLVNANRARFVGSRKRLAIVDA*
Ga0081247_1166931	Ga0081247_11669311	F006838	VLFKHNPYPEVAKGLADYWMAPENYRVMIEEGDGRWGPPYKGMYDSDFWKRPVFQHWHAMLENGRQFSSPGTMNAAIGEVLGTYTIGHMIQRVLVENWEAEKAVEEAHKKVAEIYARYQEA*
Ga0081247_1168373	Ga0081247_11683731	F055098	MSSCEAKSQALQCGDNLLDLLRMFLNTHHLGLEQLAGLLRITPQTLEEWFSEGVAPPAAFLALAVLFDSRGWRP*
Ga0081247_1169671	Ga0081247_11696712	F009409	MADQNLLTIFVAVTALAVLIQTGILVGFYFASLKLSRQLDQAMDLTRNLFGPLHSTIENLRSVTARIAEFSASTRGQLRQIENWWRRS
Ga0081247_1171191	Ga0081247_11711911	F009343	MEHAIRGRLHWDTTHAATPGWMLFIDKRPGDAPTMLPGYDTRLPREASHAEVARLIGEMLYRETGHRAQQVQITPIEEGTGYTFVAMEAGPA*
Ga0081247_1172275	Ga0081247_11722751	F009149	MLLRISHHPFLSLSVTVAVLGAVTLLGCADRTAPLQASAPSATIVSVEGASTTYHTRDWNGKPVTVRVPSQSVADIRGKDTEGTVRATVTAVDPAAHRVRVRTAEGQTIVLAMAPGSLAGLKPGDRFIFTIPEAPRT*
Ga0081247_1175319	Ga0081247_11753193	F030582	MTDLERNLNKVLEEHRHESGLHIIGGQQRLIDRLVEFFEAGLWQGRDAKSARELDN*
Ga0081247_1175663	Ga0081247_11756631	F043491	MRRLTQGVLVCVLLLAVASLAAAQGTLQVPTGTPQPVMRFGNFIEVGNDVLMHIIATTDFRYQTTENFDFEKNVRDRT
Ga0081247_1175673	Ga0081247_11756731	F015442	LTSEWWSGDGQSFRASERPLRETGSGQPVLAGGLGSVNPLPSKGGSGESTTIRPGKLLAKLSAEYAGGG
Ga0081247_1176478	Ga0081247_11764781	F009273	MQTMCLLGGIGLGAGLMYLLDPKQGEERRDLVRGYVADYGRQTGDFLDDTGRMLGRQSQAVLATTRRPFRRQPGLGERLLAQAEQFGTTTGMLLVGCVGLGVGLGYLLACQGSPQQRARLRQKARAYWRPTETRHARQQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYAEPREYDSQVLY
Ga0081247_1177584	Ga0081247_11775841	F052787	MKFKWALNLLAVSCLVASPLVLGQETTKKDKSAEVRNITGCLAKADSEGEYKVTASDGSTWEVKSKTVRLAPHVGHTVTVTGEVWHPDMHGAKEKTKETMDADAKEHGHLNVTKVEMVSESCK*
Ga0081247_1178504	Ga0081247_11785041	F090914	KLFVGATLAGLMTLGVGTAVRSANAQDSGDKQEQQASKTVSGKVASIGNGGHSFSLEVNGEGKSKMDFVVDKNTQVNGQVREGTSVTVQYQAMANGQNLAVSITANA*
Ga0081247_1179545	Ga0081247_11795451	F027763	MALADPQTITISATPYTLPRTFAEGSESAYTSSDGLIQLSLNHNLVKQGVTRHLLRLDHAKLTSDPFKPSENVKVRTTMYLVIQTPPAGYTTTEVMAVYTGWKNLFTASSDAMITKLLGGES*
Ga0081247_1180513	Ga0081247_11805131	F022644	LAGCKSPYRQLPEVGRLAYPGRAAATKHERPGRKSPSCPAAEFAAVGTIRGASKLGGRNITEYLQPRKHALREVVRRIDAGSRPYPSMGKADDTVEETGASTRCTAGVWGPASKERLSEITSGSCRGQQGLVTTCKDSPNEAKPKEERAQRERRMSQ*
Ga0081247_1180829	Ga0081247_11808291	F052443	MFVENYRQETESIMAGGDARPVPYPKLSDQDWRAWKLFLPFHAATIDRTSAKRESLYFSHGIPYALTGEIQKATEYFDKVEVWRKHDVQKDPIAVGVLGNDHYLIARWGMEKLLPFETLKKAVPLILAWRYMTSPAGVMTVLAALGYVVWGLM*
Ga0081247_1182758	Ga0081247_11827581	F034947	LLLCISTGRVTLADSINRLKPPNESHRKVDKRSRRTGKITQARQAA*
Ga0081247_1185146	Ga0081247_11851461	F054015	VTLAVARERNLPNERRPTAGQSEHERWEGHAISAGCVKTFRDVGDVEMNTAGL*
Ga0081247_1188126	Ga0081247_11881261	F003427	MVKTRSSNHKRVFTWFASWRLQASVEASLEASLEILLPQGAGQPCYEAELTPPAPENSVGKPAAN
Ga0081247_1191290	Ga0081247_11912901	F003427	VSIWFASWRPQTSAEASLEASLKFLQPQGAGRPCYEAESTSLAVENGVGKSAANARLMPARERELGELPSP
Ga0081247_1192164	Ga0081247_11921642	F017246	MYRNLRSILGVALCLLGLVSTLVFAAEQQSKPLPAAQLIAVEGATHTYHLTDYDNRVVTAAVPAQSLTDIQTRNPDGTVRATIVSIDLTTNRVKAQTDAGQVLVLGMAREDLGNMRIGDTFTLTVSQRTAVVEQR*
Ga0081247_1192260	Ga0081247_11922602	F016975	LTWFKAGGATTSQSELKSLTQESSDRKALVGPATRPLTPLAVENSVGKL
Ga0081247_1193485	Ga0081247_11934851	F076940	MHGTEHCNRVRRALHVLAPRLAFSPPAGSMPQGTPRAAPDRNRLLVTAFRSPATAAPFRSIHSGVNVPDLLLRNLPLVYAVRSDLSLHHRYRFPNNGGFIASIPLQRLQTVRTTAIAVSTPLWDFYIPLHQSVQLLSLPLSPPSESARCPFAPRMPLLITVADPDHRSWLATFPEACCS
Ga0081247_1193960	Ga0081247_11939602	F011651	MNALSSYSPVQQFALTRFGRLKMMQRDVLPHLDGSDFRVKLTLKALYSTYEDLRELGLEEEARLLLERGSVIEPKPIEQPAPEAE*
Ga0081247_1194547	Ga0081247_11945471	F001233	AATVNRLKLNLSRIIPGDWGTVESGWLTQLLLSRIARFGSGGRIHQFLWRCSRIVSNAKRN*
Ga0081247_1195544	Ga0081247_11955441	F003269	VLMVQTRKKNYRRVWTWFAGRWRNHQLKRAEKPHSKSSDRKALDGPATRPITPLAVENGVGK
Ga0081247_1197364	Ga0081247_11973642	F001346	VKTFRNAGDVKNDTAGLRTKGNLRVKRRDPWHRANGPTKSDADPALSGEDADKNSQTCLNLVRESVAQPPAQAS*
Ga0081247_1197385	Ga0081247_11973852	F016975	VSWPGSQAGGATTSRSELKSLTQQSSGGNALDGPATRPTTPLAVENSVGKPAA
Ga0081247_1198004	Ga0081247_11980041	F077054	MYEHLERLFQGLAPASEYLKGVYYELAEEFFKQLRQQIEVTQNELRESEQLELYYHTQGEEPMLVSKIGYLAPGLLVLYGTDGRNNDCKVLAHL
Ga0081247_1199514	Ga0081247_11995141	F014482	PAWLSTGMHGMEHSQAQAPDDSPLGSPNSGFPGPRINASWLAACFLLPGTGPLVTAFRSPATDAAFRLPPFRGQCSQPAPSRPPESFPCPVRPRLRCHTPGLLRWRLLLRLGPVTLPLPGPACRTALPPLPSGNFTSLGIEAFSNACCLPGSPDESARSPFAPRCPFSKVGAADHRSR
Ga0081247_1200292	Ga0081247_12002921	F032287	VGPRKDPQDTARPAERQAERFEQEKIWRGTAMSKGCAETAGDTSGDNPDPETLARNQRQAARKGGWERGRGHEETRSPTR
Ga0081247_1201550	Ga0081247_12015501	F079670	LKKGLKVLEMVKRERNKIITIDNSLKLFSILYFFFKKKYKFDLI*
Ga0081247_1202044	Ga0081247_12020441	F017118	MRLLISALAAAGIIGFSLASYAADEPYTSQPKIQKPGRAIDEGTVTAPNKPKAAGRAIDDGTVTTGKPKKYGREIDDGTVKAPNKEKAAGRAIDDGTVKTDKPKKYGRAIDDGTVKSPHKEKYGRALDDSKAVKAPNKDKPA
Ga0081247_1202048	Ga0081247_12020481	F044324	VGLAGEAAQAEEPKAGKLEREDHLGIDGRAGDGDTLRIIAAGHTQHRREKIVNGGDGNYVVEVIRAEPEGAGTHEGIRALVGGNTTADVADPRLEQSFEVDASQAGVGSNTDRKAAPTAREQRVSTRDRG*
Ga0081247_1202645	Ga0081247_12026451	F023129	VKRRDPWHRANAPSKAAADPALSGEDADKQLQTCLNLVRKPVAQPPVQAS*
Ga0081247_1202645	Ga0081247_12026452	F026580	MFAHRQYREKGTVRRGAIRNRFEPGQVAREGFEFGRIAVTQRVFGCYCVSARAGDSGGLRKGVSQTKDAERRDKVSARIGKDTRPRQDP*
Ga0081247_1203602	Ga0081247_12036022	F102644	DSVGRPRGESCESEPGTREVRVHMIRLGGRNRSDASRVFSTGRLQGLLVSKRGR*
Ga0081247_1203896	Ga0081247_12038961	F054425	IGCQLPDAILRGKRNYRPHSRTVQRLAAAELLSEAFQLASAGVCATGLPTRSRHVCDSIPRLDRLAPGQPLLLAARLPGATGLAS*
Ga0081247_1203936	Ga0081247_12039361	F001418	QGSGAEAEFTSSSDSVRALSVSEQEPGGEERLETVPTRVK*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006933: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences