Metagenome / Metatranscriptome Family F091826

Basic Information
Family ID	F091826
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	VDVSEMQRKLSQWATEDPTKRFVDLYSLLCNEQWLRVAAH
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.13 %
% of genes near scaffold ends (potentially truncated)	96.26 %
% of genes from short scaffolds (< 2000 bps)	98.13 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Bacteria (53.271 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.019 % of family members)
Environment Ontology (ENVO)	Unclassified (21.495 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.383 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.65% β-sheet: 0.00% Coil/Unstructured: 57.35%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13340	DUF4096	1.87
PF01548	DEDD_Tnp_IS110	0.93
PF13565	HTH_32	0.93
PF00873	ACR_tran	0.93
PF13655	RVT_N	0.93
PF02635	DrsE	0.93
PF00078	RVT_1	0.93
PF04002	RadC	0.93
PF00690	Cation_ATPase_N	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.93
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.27 %
Unclassified	root	N/A	45.79 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.27 %
Unclassified	root	N/A	45.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.80 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.87 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.80 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.93 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.93 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.93 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.93 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.93 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.93 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Chamaesiphonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae	0.93 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.93 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	0.93 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	0.93 %
Chamaesiphon	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon	0.93 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.93 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.93 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.93 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.93 %
Chamaesiphon minutus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon → Chamaesiphon minutus	0.93 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.93 %
Rhodococcus rhodochrous	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	0.93 %
Streptomyces tsukubensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	0.93 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	0.93 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.93 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	0.93 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.93 %
Chamaesiphon minutus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon → Chamaesiphon minutus	0.93 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.93 %
Rhodococcus rhodochrous	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	0.93 %
Streptomyces tsukubensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	0.93 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.93 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	0.93 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.93 %
Chamaesiphon minutus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon → Chamaesiphon minutus	0.93 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.93 %
Rhodococcus rhodochrous	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	0.93 %
Streptomyces tsukubensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	0.93 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.93 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11925969	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300004803\|Ga0058862_12139096	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300005172\|Ga0066683_10383397	Not Available	870	Open in IMG/M
3300005471\|Ga0070698_101057863	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005471\|Ga0070698_101634208	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005471\|Ga0070698_102163691	Not Available	510	Open in IMG/M
3300005713\|Ga0066905_100626698	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300005713\|Ga0066905_101419969	Not Available	629	Open in IMG/M
3300005719\|Ga0068861_100905459	Not Available	836	Open in IMG/M
3300005764\|Ga0066903_107690872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	555	Open in IMG/M
3300005843\|Ga0068860_101640780	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300005985\|Ga0081539_10360887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	609	Open in IMG/M
3300005985\|Ga0081539_10489442	Not Available	509	Open in IMG/M
3300006046\|Ga0066652_101497997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	626	Open in IMG/M
3300006755\|Ga0079222_10220404	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300006845\|Ga0075421_100798252	Not Available	1087	Open in IMG/M
3300006846\|Ga0075430_101617363	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006871\|Ga0075434_100942545	Not Available	878	Open in IMG/M
3300006871\|Ga0075434_101417825	Not Available	704	Open in IMG/M
3300006880\|Ga0075429_101422738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon → Chamaesiphon minutus	604	Open in IMG/M
3300006904\|Ga0075424_101064771	Not Available	862	Open in IMG/M
3300006904\|Ga0075424_102520998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	538	Open in IMG/M
3300006933\|Ga0081247_1150837	Not Available	718	Open in IMG/M
3300009012\|Ga0066710_102025269	Not Available	852	Open in IMG/M
3300009038\|Ga0099829_10984033	Not Available	700	Open in IMG/M
3300009100\|Ga0075418_12484164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300009147\|Ga0114129_11212239	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300009162\|Ga0075423_11631277	Not Available	694	Open in IMG/M
3300009444\|Ga0114945_10204365	Not Available	1146	Open in IMG/M
3300009444\|Ga0114945_10265819	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300009803\|Ga0105065_1081472	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300009814\|Ga0105082_1001727	All Organisms → cellular organisms → Bacteria	2555	Open in IMG/M
3300009817\|Ga0105062_1100599	Not Available	572	Open in IMG/M
3300010042\|Ga0126314_10744020	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300010304\|Ga0134088_10684241	Not Available	514	Open in IMG/M
3300010323\|Ga0134086_10108593	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300010333\|Ga0134080_10459032	Not Available	599	Open in IMG/M
3300010359\|Ga0126376_11187695	Not Available	777	Open in IMG/M
3300010360\|Ga0126372_11671218	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300010360\|Ga0126372_12279616	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300010362\|Ga0126377_12216802	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300010373\|Ga0134128_11665443	Not Available	702	Open in IMG/M
3300010376\|Ga0126381_104938216	Not Available	512	Open in IMG/M
3300010398\|Ga0126383_11133556	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300011269\|Ga0137392_10925977	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012096\|Ga0137389_11193048	Not Available	652	Open in IMG/M
3300012202\|Ga0137363_10667593	Not Available	879	Open in IMG/M
3300012202\|Ga0137363_10674705	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300012206\|Ga0137380_10486314	All Organisms → Viruses → Predicted Viral	1088	Open in IMG/M
3300012207\|Ga0137381_10513291	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300012207\|Ga0137381_10976196	Not Available	731	Open in IMG/M
3300012349\|Ga0137387_10560137	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300012356\|Ga0137371_10651597	Not Available	807	Open in IMG/M
3300012359\|Ga0137385_11515811	Not Available	534	Open in IMG/M
3300012374\|Ga0134039_1096202	Not Available	811	Open in IMG/M
3300012402\|Ga0134059_1171782	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012582\|Ga0137358_10757755	Not Available	648	Open in IMG/M
3300012922\|Ga0137394_10979628	Not Available	703	Open in IMG/M
3300012929\|Ga0137404_11567161	Not Available	610	Open in IMG/M
3300012948\|Ga0126375_10546705	Not Available	873	Open in IMG/M
3300012971\|Ga0126369_11296583	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300012971\|Ga0126369_13139718	Not Available	541	Open in IMG/M
3300013306\|Ga0163162_12965024	Not Available	546	Open in IMG/M
3300015200\|Ga0173480_10607601	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300015373\|Ga0132257_101314458	Not Available	918	Open in IMG/M
3300016270\|Ga0182036_10177511	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1542	Open in IMG/M
3300016270\|Ga0182036_10442923	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1020	Open in IMG/M
3300016387\|Ga0182040_10935871	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300018053\|Ga0184626_10168509	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300018077\|Ga0184633_10381913	Not Available	706	Open in IMG/M
3300018078\|Ga0184612_10509177	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300018482\|Ga0066669_11798419	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300020067\|Ga0180109_1130931	Not Available	806	Open in IMG/M
3300022563\|Ga0212128_10650270	Not Available	635	Open in IMG/M
3300025149\|Ga0209827_11113773	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300025927\|Ga0207687_10306631	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300025961\|Ga0207712_10294280	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300026542\|Ga0209805_1297929	Not Available	612	Open in IMG/M
3300027277\|Ga0209846_1059553	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300027490\|Ga0209899_1070045	Not Available	701	Open in IMG/M
3300027787\|Ga0209074_10260462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	678	Open in IMG/M
3300027846\|Ga0209180_10803669	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300027909\|Ga0209382_12086959	Not Available	540	Open in IMG/M
3300028589\|Ga0247818_11096101	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300028592\|Ga0247822_10143812	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300030006\|Ga0299907_10529271	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	927	Open in IMG/M
3300030619\|Ga0268386_10668299	Not Available	683	Open in IMG/M
3300030904\|Ga0308198_1093650	Not Available	519	Open in IMG/M
3300031114\|Ga0308187_10240816	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031562\|Ga0310886_10938061	Not Available	552	Open in IMG/M
3300031680\|Ga0318574_10583010	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031720\|Ga0307469_12244955	Not Available	532	Open in IMG/M
3300031879\|Ga0306919_11127671	Not Available	597	Open in IMG/M
3300031880\|Ga0318544_10294830	Not Available	629	Open in IMG/M
3300031890\|Ga0306925_10856396	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300031910\|Ga0306923_12484003	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031912\|Ga0306921_10618391	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300032003\|Ga0310897_10706791	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300032013\|Ga0310906_11029994	Not Available	593	Open in IMG/M
3300032017\|Ga0310899_10255901	Not Available	797	Open in IMG/M
3300032059\|Ga0318533_10614809	Not Available	797	Open in IMG/M
3300032059\|Ga0318533_11142057	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032075\|Ga0310890_10033593	All Organisms → cellular organisms → Bacteria	2792	Open in IMG/M
3300032075\|Ga0310890_10679919	Not Available	804	Open in IMG/M
3300032770\|Ga0335085_10548964	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300034662\|Ga0314783_099291	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300034664\|Ga0314786_048642	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.31%
Host-Associated	Host-Associated	18.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.83%
Plants	Host-Associated → Plants	17.76%
Aquatic	Environmental → Aquatic	7.48%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.61%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.74%
Sediment	Environmental → Aquatic → Sediment	2.80%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Digestive System	Host-Associated → Human → Digestive System	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Sand	Environmental → Terrestrial → Soil → Sand	4.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.67%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.21%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.67%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.67%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006933	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025149	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091826

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_119259692	3300000890	Soil	MQRKLSQWATENPEDQYRDLYSLLCHETWLRVAHH
Ga0058862_121390961	3300004803	Host-Associated	VDVSEMQRKLSQWATDDPTKRFVDLYSLLCNEVWLRVAANDTLRN
Ga0066683_103833972	3300005172	Soil	VDVSEMQRKLSQWATENPTEQRRELYNLLCEEIWLRVAHHSVN
Ga0070698_1010578631	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VSEMQRKLSQWATDDPTKRFVDLYSLLCNDVWLRVAHHKV
Ga0070698_1016342082	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDVSEMQRKLSQWATDDPTKRFVDLYSLLCNDVWLRVAHHK
Ga0070698_1021636911	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDVGEMQKRLSQTAERDAEHVFDDLYSLLCNVVLSQSQN*
Ga0066905_1006266982	3300005713	Tropical Forest Soil	VDVGEMQTKLSQWATEDPMKRFTDLYSLLCNEVWLRVA
Ga0066905_1014199691	3300005713	Tropical Forest Soil	VDVGEMQKKLSRWATENPEDHYRDLYSLLCNDTWLRVAHH
Ga0068861_1009054591	3300005719	Switchgrass Rhizosphere	VDVGEMQQKLSRWATEDHERKFTDLYSLLCNETWL
Ga0066903_1076908721	3300005764	Tropical Forest Soil	VKVDEMQRKLSQRATEEPEHKFENLYSLLCNEVWLR
Ga0068860_1016407802	3300005843	Switchgrass Rhizosphere	VDVGEMQMKLSQWATEDPAKRFTDLYSLLCNEVWLRV
Ga0081539_103608871	3300005985	Tabebuia Heterophylla Rhizosphere	VDVSEMQRKLSQWATEDPTKRFVDLSSLLWNVVWLRVAHQAV
Ga0081539_104894422	3300005985	Tabebuia Heterophylla Rhizosphere	VDVSEMQKKLSQWATENPQESYRELYHLLCNEVWL
Ga0066652_1014979971	3300006046	Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNEVWLRVAAHDTLQN
Ga0079222_102204043	3300006755	Agricultural Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNEVWLRVAHHKVNTNRRRETAGID*
Ga0075421_1007982523	3300006845	Populus Rhizosphere	MDVSEMQRKLSQKAIEAPEHTFDDLYSLLCNDTWLRVAHR
Ga0075430_1016173631	3300006846	Populus Rhizosphere	VDVSEMQKKLSQWATDEPAKNFVGLYSLLCNEIWLRVAHHSVNTNQGRETAG
Ga0075434_1009425452	3300006871	Populus Rhizosphere	MQKKLRQWATENPDDHYRELYHLRCHEGWLRVAHHAVNTNQGRETAG
Ga0075434_1014178252	3300006871	Populus Rhizosphere	VDVSEMQRKLSQWATENPTEQRRELYNLLCNEVWLRV
Ga0075429_1014227381	3300006880	Populus Rhizosphere	VDVGEMQRKLSLMAEEKPEHRFGDLYSLLCNEVWLRVAAH
Ga0075424_1010647712	3300006904	Populus Rhizosphere	VDVGEMQRKLSQWATENPADQYRDLYSLLCNETWLRVAHRSV
Ga0075424_1025209981	3300006904	Populus Rhizosphere	VDVGEMQRKLSRWATEDHERKFTDLYSLLCNETWLRAAHRHVNSNA
Ga0081247_11508372	3300006933	Tropical Rainforest Soil	VDPCEMQRKLSQWATDDPTKKFVDLYSLLCKEVWLRV
Ga0066710_1020252693	3300009012	Grasslands Soil	VDVGEMQRKLSQWAPENPEDQYRDLYSLLCHETWLRVAHHSVNTNQGR
Ga0099829_109840331	3300009038	Vadose Zone Soil	VDVGEMQRKLSQWATEEPTKQFVDLYSLLCHEVWLRV
Ga0075418_124841641	3300009100	Populus Rhizosphere	MDVSEMQRKLSLTAQEKPEHKFGDLYSLLCNETWLRV
Ga0114129_112122391	3300009147	Populus Rhizosphere	VDVGEMQRKLSQWATEDKERKFRDLYSLLCNPLWLRVAHQKVNANQGRET
Ga0075423_116312771	3300009162	Populus Rhizosphere	VDVSEMQKKLRQWATENPDDHYRELYHLRCHEGWLRVAHHSVNTNQGRE
Ga0114945_102043652	3300009444	Thermal Springs	VDVSEMQKKLSQWATENPLDQYRELYHLLCHDVWLRVAHHSVNANQGR
Ga0114945_102658192	3300009444	Thermal Springs	MDVGEMQKKLSQTAARDPNHKFGDLYSLLCNQVWLRVAHHAVNANQGRETA
Ga0105065_10814722	3300009803	Groundwater Sand	VDVGEMQKKLSQWATENPEEQYRDLYSLLCNDVWLRVAHHSVNANQGRD
Ga0105082_10017273	3300009814	Groundwater Sand	MQRKLRQWATDDPTKRFVDLYSLLCNEEWLRVAAHETLKNS
Ga0105062_11005991	3300009817	Groundwater Sand	VNIGEMQKKLSQWAEDDQERKFKDLYSLLCNIEWLREAYKKVNSNRGR
Ga0126314_107440202	3300010042	Serpentine Soil	VDVGEMQKKLSQWATEDPTKRFVDLYSLLCNETWLRAATHAT
Ga0134088_106842411	3300010304	Grasslands Soil	VDVSEMQRKLSQWATEDPTKRFVDLSSLLCNVVWLRV
Ga0134086_101085932	3300010323	Grasslands Soil	VDVGEMQRKLSQWAPENPEDQYRDLYSLLCHDTWLRVAHHAVNT
Ga0134080_104590321	3300010333	Grasslands Soil	VDVSEMQKKLSQWATENPTEQRRELYNLLCNEVWLRAAHHKVNSNQGR
Ga0126376_111876951	3300010359	Tropical Forest Soil	VDVSEMQKKLSQWATEHPEDQYRELYHLLCNAGWLRVAHHAVNTNQGRET
Ga0126372_116712181	3300010360	Tropical Forest Soil	MDVGEMQKRLSQTAERDPAHVFDDLYSLLCNAVWLRVAHQHVNTNQGRETA
Ga0126372_122796161	3300010360	Tropical Forest Soil	VDVGEMQTKLSQWATEDPMKRFTDLYSLLCNEVWLRVAHHSVNTNQGRET
Ga0126377_122168021	3300010362	Tropical Forest Soil	VDVGEMQTKLSQWATEDPMKRFTDLYSLLCNEVWLRVAHHSVNTN
Ga0134128_116654432	3300010373	Terrestrial Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNEVWL
Ga0126381_1049382161	3300010376	Tropical Forest Soil	VDVSEMQRKLSQWATADPTKRLVDLYSLLCNDVWLRVAHHKVNSNRGRETAGI
Ga0126383_111335561	3300010398	Tropical Forest Soil	VDPIEMQKKLSQWATENPTEQRRELYNLLCSEIWLRVAHHKVNSNQGRETA
Ga0137392_109259771	3300011269	Vadose Zone Soil	VDVSEMQKRLSAAAEKDPGHQFGDLYSLLCNEVWLRVAHHHV
Ga0137389_111930481	3300012096	Vadose Zone Soil	VDVSEMQRKLSQWATEDPTKRFVDLSSLLCHVVWLRVAHHAVN
Ga0137363_106675932	3300012202	Vadose Zone Soil	VDVGEMQRKLRQWATENPEDQYRDLYSLLCHETWLRVAQHSVNTNQ
Ga0137363_106747051	3300012202	Vadose Zone Soil	VDVSEMQRKLSQWATENPTESRRELYNLLCNEVWLRVAHHS
Ga0137380_104863141	3300012206	Vadose Zone Soil	VDVGEMQKKLSQWATENPEGQYRELYHLLCTEIWLRVAHHSV
Ga0137381_105132911	3300012207	Vadose Zone Soil	VDVGEMQRKLSQWAPEHPEDQYRDLYSLLCHDTWLRVAHHSVNTNQGRETA
Ga0137381_109761962	3300012207	Vadose Zone Soil	MQKKLSQWATDDPTKRFVDLYSLLCNETWLRVAAHETLQNKGSET
Ga0137387_105601372	3300012349	Vadose Zone Soil	MQRKLSLTAQEKLEHKFGDLYSLLCNEVWLRVAAH
Ga0137371_106515972	3300012356	Vadose Zone Soil	VDVSEMQKKLSQWATENPEKSYRELYHLLCNEVWLRVA
Ga0137385_115158111	3300012359	Vadose Zone Soil	MQKKLSQWATENPTEQRRELYNLLCNEVWLRAAHHKVNSNQGRETAG
Ga0134039_10962021	3300012374	Grasslands Soil	VDVGEMQKKLSQWATEDNERKFKDLYSLLCNPLWLRVAHQKVNSNQGRETAGID
Ga0134059_11717822	3300012402	Grasslands Soil	VDVGEMQRKLSQWATDDPTKPFVDLYSLLCNEVWLRVAHHK
Ga0137358_107577552	3300012582	Vadose Zone Soil	VDVSEMQRKLSQWATDDPTKRFVDLYSLLCNEVWL
Ga0137394_109796281	3300012922	Vadose Zone Soil	VDVGEMQKKLSRWATENPEDQYRDLYNLLCNEVWL
Ga0137404_115671611	3300012929	Vadose Zone Soil	VDVSEMQRKLSQWATEDPTKRFVDLSSLLCHVVWLRVAHHAVNTNQ
Ga0126375_105467052	3300012948	Tropical Forest Soil	VDVGEMQTKLSQWATEDPMKRFTDLYSLLCNEVWLR
Ga0126369_112965831	3300012971	Tropical Forest Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNDVWLRVAHHKVNT
Ga0126369_131397181	3300012971	Tropical Forest Soil	VDVSEMQKKLSQWATENPTEQRRELYNLLCNEVWLRVAHHKV
Ga0163162_129650241	3300013306	Switchgrass Rhizosphere	VDVSEMQRKLSQWAAENPQEQYRELSHLLCNEVWLRVA
Ga0173480_106076011	3300015200	Soil	VDPCEMQKKLSRWATDDPTKRFVDLYSLLCNEIWLRVAAHATLSNK
Ga0132257_1013144581	3300015373	Arabidopsis Rhizosphere	VDVGEMQRKLSQWAVENPDEQYRELYHLLCTEPWLRAAHH
Ga0182036_101775113	3300016270	Soil	VDVSEMQKKLSQWATENPTEQYRELYNLLCEDIWLRMAHRSVNSNAGRE
Ga0182036_104429232	3300016270	Soil	VDVSEMQKKLSQWATDDPTKRFVDLYSLLCNETWLRVAAHSVFSN
Ga0182040_109358711	3300016387	Soil	VDPCEMQKKLRRWAMDDPTKRFVDLYSLLCHERWLRVAAHATLSNKGSETAGIDNM
Ga0184626_101685091	3300018053	Groundwater Sediment	MDVSEMQRRLSQTAEKDPEHQFGDLYSLLCHEVWLRVA
Ga0184633_103819132	3300018077	Groundwater Sediment	VDVGEMQRKLSQWAIENPADQYRELYHLLCNEVWLR
Ga0184612_105091771	3300018078	Groundwater Sediment	MQKKLSQWATENPTEQRRELYNLLCNEVWLRVAHHSVNSNQGRETA
Ga0066669_117984191	3300018482	Grasslands Soil	VDVSEMQRKLSQWATDDPEKKFTDLYSLLCNEVWLRVAAH
Ga0180109_11309312	3300020067	Groundwater Sediment	VDVSEMQKKLSQWATENPEEQYRELYHLLCNEVWLRVAHHSVNSNQGRET
Ga0212128_106502701	3300022563	Thermal Springs	VDVGEMQKKLSQWAIENPDDQYRELYSLLCNQIWLR
Ga0209827_111137732	3300025149	Thermal Springs	VDVSEMQRKLSQWAADEPTKRFVDLSSLLCNDVWLRVAAHEVLK
Ga0207687_103066311	3300025927	Miscanthus Rhizosphere	VDVGEMQRKLSRWATEDHERKFTDLYSLLCNETWLRAAHRHVNSN
Ga0207712_102942803	3300025961	Switchgrass Rhizosphere	VDPCEMQKKLSRWATDDPTKRFVDLYSLFCNERWL
Ga0209805_12979291	3300026542	Soil	VNVDEMQKKLSQWATEDHTKKFVDLYSLLCNEEWLRRAFQSVNANQ
Ga0209846_10595531	3300027277	Groundwater Sand	VDVSEMQRKLSQWATENPQEQYRELYHLLCNEVWLRVAAHKTLKNKGSE
Ga0209899_10700451	3300027490	Groundwater Sand	VDVSEMQKKLSQWATENPAEQYRELYHLLCTEEWLRVAHQKVNSNRGRETAGV
Ga0209074_102604621	3300027787	Agricultural Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNEVWLRVAHHKVNTNRGRETA
Ga0209180_108036692	3300027846	Vadose Zone Soil	VDPCEMQKKLSRWATDDPTKRFVDLYSLLCNEIWLRVAAHAT
Ga0209382_120869591	3300027909	Populus Rhizosphere	VDVGEMQKKLSQWATEDPTKRFVDLYSLLCNEIWL
Ga0247818_110961011	3300028589	Soil	VDPCEMQKKLSRWATDDPTKRFVDLYSLLCNEIWLRVAAHT
Ga0247822_101438122	3300028592	Soil	VDVSEMQRKLSQWATDDPTKRLVDLYSLLCNEVWLRVAVHETLRGCLKSRS
Ga0299907_105292711	3300030006	Soil	VDVGEMQKKLSQWAEQDKELRFFDLYHLLHQEDWIGTAQV
Ga0268386_106682991	3300030619	Soil	MDVGEMQKKLSRWAEQDRSKRFYDLFDLLHQDDWI
Ga0308198_10936501	3300030904	Soil	VDVSEMQRKLSQWATENPTEQRRELYNLLCEEIWLRVAHHSVNSNQGR
Ga0308187_102408161	3300031114	Soil	VDVGEMQRKLSQWATENPEDQYRDLYSLLCKEIWLRVAHHSVNTNQG
Ga0310886_109380612	3300031562	Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNDVWL
Ga0318574_105830102	3300031680	Soil	VDVSEMQRKLSQWATAEPTKRFVDLYSLLCNEIWLRVAHHKVNTN
Ga0307469_122449551	3300031720	Hardwood Forest Soil	VDVSEMQKKLSQWATENPDDQYRELYHLLCHEGWLRVAHHAVNTNQ
Ga0306919_111276711	3300031879	Soil	VDVGEMQRKLSQWAVENPEDQYRELYHLLCTEPWLRAAHHHVN
Ga0318544_102948301	3300031880	Soil	VDVSEMQRKLSQRATEDTEHQFENLYNLLCNQQFPLIP
Ga0306925_108563962	3300031890	Soil	MNRRRPVDVGEMQKKLSQWATEDPTKRFVDLYSLLCNETWLRAATHATLRNKGSETA
Ga0306923_124840031	3300031910	Soil	VDVSEMQRKLSQWATEDPTKRFVDLYSLLCNEQWLRVAAH
Ga0306921_106183911	3300031912	Soil	VDVGEMQKKLSQWATEDPTKRFVDLYSLLCNETWLRAATHATLRNKGSETA
Ga0310897_107067911	3300032003	Soil	VDVSEMQRKLSQWATADPTKRFVDLYSLLCNDVWLRVAH
Ga0310906_110299941	3300032013	Soil	VDVSEMQKKLSQWATENPGAPYRELYHLLCNEVWLR
Ga0310899_102559011	3300032017	Soil	VDVSEMQRKLSQWATEDSTKRFVDLYSLLCNVVWLRV
Ga0318533_106148091	3300032059	Soil	VDVGEMQRKLSQWAVENPEDQYRELYHLLCTEPWLRAAHHHV
Ga0318533_111420571	3300032059	Soil	MQRKLSLTAQEKPEHKFGDLYSLLCNEVWLRVAAHDTLQ
Ga0310890_100335934	3300032075	Soil	VDVGEMQRKLSRWATEDHERKFTDLYSLLCNETWLRAAHR
Ga0310890_106799191	3300032075	Soil	VDVSEMQRKLSQWATDDPTKHFVDLYSLLCNELWLQVAVNETLRNA
Ga0335085_105489641	3300032770	Soil	MQRKLSLTAQEKPEHKFGDLYSLLCNDTWLRVAAHAT
Ga0314783_099291_2_124	3300034662	Soil	MDVSEMQRKLSQWATEDSTKRFVDLYSLLCNEVWLRVAHHT
Ga0314786_048642_652_792	3300034664	Soil	MDVSEMQRKLSQWATEDSTKRFVDLYSLLCNEVWLRVAHHTVNTNQG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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