Metagenome / Metatranscriptome Family F100618

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100618
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	72 residues
Representative Sequence	MPALATYPAATPAVSSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.55 %
% of genes near scaffold ends (potentially truncated)	26.47 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.235 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment (10.784 % of family members)
Environment Ontology (ENVO)	Unclassified (24.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.235 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.27% β-sheet: 7.07% Coil/Unstructured: 65.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01189	Methyltr_RsmB-F	11.76
PF13636	Methyltranf_PUA	10.78
PF00919	UPF0004	6.86
PF04055	Radical_SAM	4.90
PF00300	His_Phos_1	3.92
PF06897	DUF1269	0.98
PF03328	HpcH_HpaI	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	11.76
COG0621	tRNA A37 methylthiotransferase MiaB	Translation, ribosomal structure and biogenesis [J]	6.86
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.98
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.98
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.98
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	65.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	65.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	65.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	65.69 %
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	65.69 %
Dissulfurirhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	65.69 %
Dissulfurirhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus	13.73 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	65.69 %
Dissulfurirhabdus thermomarina	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	13.73 %
Unclassified	root	N/A	11.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0780771	Not Available	523	Open in IMG/M
3300003373\|JGI25407J50210_10009024	All Organisms → cellular organisms → Bacteria	2519	Open in IMG/M
3300003706\|Ga0008095_108832	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	530	Open in IMG/M
3300004633\|Ga0066395_10127035	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1265	Open in IMG/M
3300004633\|Ga0066395_11001269	Not Available	510	Open in IMG/M
3300005332\|Ga0066388_100210679	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2569	Open in IMG/M
3300005332\|Ga0066388_101074570	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1359	Open in IMG/M
3300005332\|Ga0066388_103098021	Not Available	849	Open in IMG/M
3300005332\|Ga0066388_103242886	Not Available	831	Open in IMG/M
3300005719\|Ga0068861_101727424	Not Available	619	Open in IMG/M
3300005764\|Ga0066903_103208778	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	884	Open in IMG/M
3300005764\|Ga0066903_103563300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	839	Open in IMG/M
3300005764\|Ga0066903_106222546	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005764\|Ga0066903_106832636	Not Available	593	Open in IMG/M
3300005844\|Ga0068862_100969549	Not Available	839	Open in IMG/M
3300006844\|Ga0075428_100628735	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300006844\|Ga0075428_101483426	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006933\|Ga0081247_1166465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	919	Open in IMG/M
3300006938\|Ga0081245_1486194	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	555	Open in IMG/M
3300006969\|Ga0075419_10118175	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1715	Open in IMG/M
3300007255\|Ga0099791_10070104	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1589	Open in IMG/M
3300009038\|Ga0099829_10112639	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2132	Open in IMG/M
3300009088\|Ga0099830_11181456	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	635	Open in IMG/M
3300009089\|Ga0099828_10047127	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	3561	Open in IMG/M
3300009094\|Ga0111539_10393999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1613	Open in IMG/M
3300009100\|Ga0075418_11052159	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	881	Open in IMG/M
3300009137\|Ga0066709_101063662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1188	Open in IMG/M
3300009553\|Ga0105249_11666544	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	710	Open in IMG/M
3300009610\|Ga0105340_1410985	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	603	Open in IMG/M
3300009792\|Ga0126374_10601879	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	811	Open in IMG/M
3300009811\|Ga0105084_1018952	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1128	Open in IMG/M
3300009820\|Ga0105085_1027234	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1001	Open in IMG/M
3300010043\|Ga0126380_10835244	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	758	Open in IMG/M
3300010046\|Ga0126384_11694254	Not Available	598	Open in IMG/M
3300010072\|Ga0127428_101828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	948	Open in IMG/M
3300010107\|Ga0127494_1064891	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	932	Open in IMG/M
3300010141\|Ga0127499_1081399	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	596	Open in IMG/M
3300010145\|Ga0126321_1303082	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	521	Open in IMG/M
3300010145\|Ga0126321_1306697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	741	Open in IMG/M
3300010154\|Ga0127503_11184643	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	920	Open in IMG/M
3300010360\|Ga0126372_12173974	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	604	Open in IMG/M
3300010362\|Ga0126377_12379670	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	606	Open in IMG/M
3300010398\|Ga0126383_10456074	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300010398\|Ga0126383_10558749	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1211	Open in IMG/M
3300011271\|Ga0137393_10957095	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	730	Open in IMG/M
3300012212\|Ga0150985_106649354	Not Available	967	Open in IMG/M
3300012212\|Ga0150985_118154535	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	735	Open in IMG/M
3300012349\|Ga0137387_10240550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1304	Open in IMG/M
3300012373\|Ga0134042_1220482	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	532	Open in IMG/M
3300012377\|Ga0134029_1003083	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	522	Open in IMG/M
3300012387\|Ga0134030_1105617	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	719	Open in IMG/M
3300012388\|Ga0134031_1167355	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	677	Open in IMG/M
3300012469\|Ga0150984_113519429	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1839	Open in IMG/M
3300012532\|Ga0137373_10281967	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1328	Open in IMG/M
3300012971\|Ga0126369_10485934	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1290	Open in IMG/M
3300012976\|Ga0134076_10544582	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	535	Open in IMG/M
3300015264\|Ga0137403_11508811	Not Available	523	Open in IMG/M
3300016294\|Ga0182041_12264252	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	508	Open in IMG/M
3300018056\|Ga0184623_10048287	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1941	Open in IMG/M
3300018066\|Ga0184617_1234158	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	549	Open in IMG/M
3300018079\|Ga0184627_10007743	All Organisms → cellular organisms → Bacteria	4912	Open in IMG/M
3300019208\|Ga0180110_1093376	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	682	Open in IMG/M
3300019208\|Ga0180110_1218656	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	615	Open in IMG/M
3300019232\|Ga0180114_1345656	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	790	Open in IMG/M
3300019233\|Ga0184645_1307239	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	555	Open in IMG/M
3300019254\|Ga0184641_1220543	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	516	Open in IMG/M
3300019255\|Ga0184643_1138336	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	972	Open in IMG/M
3300019255\|Ga0184643_1300816	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	515	Open in IMG/M
3300019255\|Ga0184643_1481533	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	515	Open in IMG/M
3300019279\|Ga0184642_1080849	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	692	Open in IMG/M
3300019279\|Ga0184642_1434038	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	632	Open in IMG/M
3300019487\|Ga0187893_10197849	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1550	Open in IMG/M
3300020193\|Ga0194131_10069952	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2123	Open in IMG/M
3300021560\|Ga0126371_10432503	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1461	Open in IMG/M
3300022195\|Ga0222625_1746974	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	719	Open in IMG/M
3300025961\|Ga0207712_11018379	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	735	Open in IMG/M
3300026313\|Ga0209761_1331471	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	518	Open in IMG/M
3300027056\|Ga0209879_1081253	Not Available	509	Open in IMG/M
3300027490\|Ga0209899_1014517	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1792	Open in IMG/M
3300027561\|Ga0209887_1077958	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	684	Open in IMG/M
3300027880\|Ga0209481_10358500	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300027907\|Ga0207428_10299097	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1191	Open in IMG/M
3300027957\|Ga0209857_1040603	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	837	Open in IMG/M
3300028380\|Ga0268265_10814017	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	911	Open in IMG/M
3300028792\|Ga0307504_10022868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1575	Open in IMG/M
3300030537\|Ga0247642_1046917	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	528	Open in IMG/M
3300030574\|Ga0247648_1002800	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300030608\|Ga0247651_10027019	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1031	Open in IMG/M
3300030614\|Ga0247657_10012461	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300030635\|Ga0247627_10058644	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	858	Open in IMG/M
3300030783\|Ga0102752_1560996	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	597	Open in IMG/M
3300030904\|Ga0308198_1053279	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	632	Open in IMG/M
3300030993\|Ga0308190_1179158	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	522	Open in IMG/M
3300030998\|Ga0073996_12338619	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	778	Open in IMG/M
3300031039\|Ga0102760_10714152	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	729	Open in IMG/M
3300031091\|Ga0308201_10280075	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	586	Open in IMG/M
3300031092\|Ga0308204_10299949	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	537	Open in IMG/M
3300031114\|Ga0308187_10072520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Dissulfurirhabdaceae → Dissulfurirhabdus → Dissulfurirhabdus thermomarina	1007	Open in IMG/M
3300031114\|Ga0308187_10234703	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	659	Open in IMG/M
3300032076\|Ga0306924_12327533	Not Available	542	Open in IMG/M
3300033289\|Ga0310914_11793031	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	518	Open in IMG/M
3300034643\|Ga0370545_050324	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	808	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.31%
Host-Associated	Host-Associated	15.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.69%
Aquatic	Environmental → Aquatic	18.63%
Plants	Host-Associated → Plants	15.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.71%
Freshwater	Environmental → Aquatic → Freshwater	14.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Sediment	Environmental → Aquatic → Sediment	3.92%
Cave	Environmental → Terrestrial → Cave	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.02%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.78%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.82%
Sand	Environmental → Terrestrial → Soil → Sand	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	10.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	5.88%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003706	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006933	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006938	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010072	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010107	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012377	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012387	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030537	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030574	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030608	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030614	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb10 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030635	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030783	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_07807711	3300000033	Soil	MPALATYPAATPATSSDPASITTTLYDLVAALNAXVXPEDDALVTAAVVHLINSNRAXXXGSRKRXAIX*
JGI25407J50210_100090243	3300003373	Tabebuia Heterophylla Rhizosphere	MPALAEYPAATPAVSSDPASITTTLYDLVAALNAEVDPEDDALVTTAAVRLINANRARFVGSRKRLAIVMPKTRRQDAVVAEVA*
Ga0008095_1088321	3300003706	Tropical Rainforest Soil	PAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLVNANRARFVGSRKRLAIVDA*
Ga0066395_101270352	3300004633	Tropical Forest Soil	MPALATYPAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0066395_110012691	3300004633	Tropical Forest Soil	MPALATYLAAALAAASATMRITTTLYDLVVACNTEVDTENDALVAAAVAHLINAHRARFVGSCMRLTIVDA*
Ga0066388_1002106791	3300005332	Tropical Forest Soil	MPALATYPATIPATSAEPTRITTTLYDLVEALNTEVEPADDYLVTAAVMHLINAGHARFVGSHKRLAIIDA*
Ga0066388_1010745703	3300005332	Tropical Forest Soil	MPALATHPATYPATTPVTSSDSTCIRTTLYDLIAALNADVDPEDDALVTAAVVHLINANHARFVGSRKRLAIVDA*
Ga0066388_1030980212	3300005332	Tropical Forest Soil	MPALATYPATIPATSTEPTRITTTLYDLVAALNTEVEPADDYLVTAAVMHLINAGHARFVGSRQ
Ga0066388_1032428861	3300005332	Tropical Forest Soil	MPALATYPASTPAASSDTVSITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDV*
Ga0068861_1017274242	3300005719	Switchgrass Rhizosphere	MPALATYPATAPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA*
Ga0066903_1032087781	3300005764	Tropical Forest Soil	YPAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0066903_1035633002	3300005764	Tropical Forest Soil	GDDIMPALATYPAETPAASSDPASITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0066903_1062225462	3300005764	Tropical Forest Soil	ALAIYQAAILAASSATTSITTTLYELVVALNAAVDAEDDALVTAAVVHLINAHRARFVGSCKRLAIVEA*
Ga0066903_1068326361	3300005764	Tropical Forest Soil	MPALATYPATIPATSAEPTRITTTLYDLVEALNMEVEPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA*
Ga0068862_1009695492	3300005844	Switchgrass Rhizosphere	MPALATYPAATPATSSDPASITTTLYDLVAALNAEVEREDDALVTAAVVHLINANRARFIGSRKRLAIVEV*
Ga0075428_1006287351	3300006844	Populus Rhizosphere	MPALATCPAATPATSSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDV*
Ga0075428_1014834262	3300006844	Populus Rhizosphere	MPALTTYPAVTPVASSDPATITTTLYELVVALNAEVDPEDDALVTAAVMHLINVNRARFVGSCKTLAIVDT*
Ga0081247_11664651	3300006933	Tropical Rainforest Soil	DITVYKGDDIMPALATYPAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLVNANRARFVGSRKRLAIVDA*
Ga0081245_14861941	3300006938	Tropical Rainforest Soil	MTAVATSPATVSAVAAAPTRLTTTLYDLVAALNAEVDPEDDTLVTAAVFHLINAHRTRFVGSRRKLEIVEA*
Ga0075419_101181753	3300006969	Populus Rhizosphere	MPALATCPAATPATSSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDA*
Ga0099791_100701042	3300007255	Vadose Zone Soil	MPALATYPAAIPAASSDPASITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA*
Ga0099829_101126392	3300009038	Vadose Zone Soil	LKPLYDDITTYEGDDIMPALAMYPAATPAASLDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0099830_111814562	3300009088	Vadose Zone Soil	LKPLYDDITTYEGDDIMPVLATYPAATPAASSDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0099828_100471274	3300009089	Vadose Zone Soil	LKPLYDDITTYEGDDIMPALATYPAATPAASLDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0111539_103939993	3300009094	Populus Rhizosphere	VSENIEVLIGDRTIYEGDEIMPALATCPAATPATSSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDV*
Ga0075418_110521592	3300009100	Populus Rhizosphere	MPALATYPVATPAPSSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0066709_1010636623	3300009137	Grasslands Soil	MPALATYPAAIPAASSAPASITITLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0105249_116665442	3300009553	Switchgrass Rhizosphere	MRALATYPATAPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA*
Ga0105340_14109852	3300009610	Soil	MPALATYPATVPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA*
Ga0126374_106018792	3300009792	Tropical Forest Soil	MPALATYPAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDA*
Ga0105084_10189522	3300009811	Groundwater Sand	MPALATYPATIPATSAEPTRITTTLYDLVEALSTEVDPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA*
Ga0105085_10272341	3300009820	Groundwater Sand	MPALATYPATIPATSAEPTRITTTLYDLVEALNTEVDPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA*
Ga0126380_108352442	3300010043	Tropical Forest Soil	MPALATYPAATPAASSDSTSITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0126384_116942542	3300010046	Tropical Forest Soil	MPALTTYPPVTPVASSDPVSITTTLYELVVALNAEVDPEDDALVTAAVIHLINVNRARFVGSCKTLAIVDT*
Ga0127428_1018281	3300010072	Grasslands Soil	MPALATYPAATPASSSDPASITTTVYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0127494_10648911	3300010107	Grasslands Soil	ATPATSSDPASITTTLYDLITALNAEVGPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0127499_10813992	3300010141	Grasslands Soil	MPALATYPAATPASSSDPVSITTTLYDPVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0126321_13030821	3300010145	Soil	MPALATYPVATPAASSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINSNHARFVGSRKRLAIVDA*
Ga0126321_13066973	3300010145	Soil	YEGDEIMPALATCPAATPATFSDPASITTTLYDLVAALNTEVDPEDDALVTAAVVHLINSNRARFVGSRKRLAIVDA*
Ga0127503_111846431	3300010154	Soil	MPALATYPAAIPAASSDPASITTTLYDLIAALNAEVGPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDA*
Ga0126372_121739741	3300010360	Tropical Forest Soil	MPALATYPAATPAATSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0126377_123796701	3300010362	Tropical Forest Soil	MPALATYPATTPAASSEPASITTTWYDLVEALSAEVHPEDDALVTAAVVHLINSNRARFIGSRKRLAIVDA*
Ga0126383_104560742	3300010398	Tropical Forest Soil	MPAPATDPAATPAAASNPTRITTTLYELVAALNAQVAPEDDALVTAAVIHLMHVHRARFVGSCTRLALVEAYN*
Ga0126383_105587491	3300010398	Tropical Forest Soil	MPALATYPAATPAASLDQASITTTLYDLVEALNAEVSPEDDALVTAAVVHLINANRARFVGSRKRLAIVDV*
Ga0137393_109570952	3300011271	Vadose Zone Soil	LKPLYDDITTYEGDDIMPALATYPAAIPAASSDPASITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA*
Ga0150985_1066493543	3300012212	Avena Fatua Rhizosphere	MPALATYPATILATSTEPTRITTTLYDLVEALSTEVEPEDDSLVTAAVMHLINAGHAQFVGSRHRLSIIDA*
Ga0150985_1181545351	3300012212	Avena Fatua Rhizosphere	IVLKSLYDNIATYEGDNIMPALATYPAATPAASSDPASITTTLYDLVAALNAEVDTEDDALVTAAVVHLINSNRARFVGSRKRLAIVDA*
Ga0137387_102405503	3300012349	Vadose Zone Soil	MPALATYPAATPAVSSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0134042_12204821	3300012373	Grasslands Soil	MPALATYPAATSAASSDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0134029_10030831	3300012377	Grasslands Soil	MPALATYPAATPASSSDPASITTTLYDLVAALNTEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0134030_11056172	3300012387	Grasslands Soil	MPALATYPAATPAPSSDPASITTTLYNLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0134031_11673551	3300012388	Grasslands Soil	ATPASSSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDA*
Ga0150984_1135194293	3300012469	Avena Fatua Rhizosphere	MPALATYPAATPAASSDPASITTTLYDLVAALNAEVDTEDDALVTAAVVHLINSNRARFVGSRKRLAIVDA*
Ga0137373_102819672	3300012532	Vadose Zone Soil	MPALATYPATIPATSAAPTRITTTLYDLVEALNTEVDPADDYLVTAAVMHLINSGHSRFDGSHKRLAIIDA*
Ga0126369_104859341	3300012971	Tropical Forest Soil	MPALATYPAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFV
Ga0134076_105445821	3300012976	Grasslands Soil	MPALATYPAATSAASSDPASITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA*
Ga0137403_115088111	3300015264	Vadose Zone Soil	MPALATYPAAIPAASSDPASNTTTLYDLIAALNAEVDPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA*
Ga0182041_122642521	3300016294	Soil	ITIYEGDDIMPALAAYTAATPAASLDQASITTTLYDLVEALNAEVNPVDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Ga0184623_100482872	3300018056	Groundwater Sediment	MPALATYPATASATSAEPTRITTTLYDLVDALSAEAAPEDDCLVTAAVMHLINSGRARFVGSRKTLAIVDA
Ga0184617_12341581	3300018066	Groundwater Sediment	MPALATYPATIPATSAEPTRITTTLYDLVEALSTEVDPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA
Ga0184627_100077436	3300018079	Groundwater Sediment	MPALATYPATASATSAEPTRITMTLYDLVDALSAEVAPEDDSLVTAAVMHLINSGRARFVGSRKT
Ga0180110_10933762	3300019208	Groundwater Sediment	PALATYPATIPATASETTSLTTTLYDLVAALNIEVNAEDDALVTAAVVHLINANRVRFVGSRKRLAIVDA
Ga0180110_12186561	3300019208	Groundwater Sediment	MPALATYPATVPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA
Ga0180114_13456562	3300019232	Groundwater Sediment	MPALATYPATIPATASETTSLTTTLYDLVAALNSEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA
Ga0184645_13072391	3300019233	Groundwater Sediment	MPALATAPATVPATSAKPTRITTTLFDLVDALSAEVDPEEDYLVTAAVVHLINSGRARFAGSRKTLAIVDA
Ga0184641_12205432	3300019254	Groundwater Sediment	VPATSAAPTRITTTLFDLVDALSAEVDPKEDYLITAAVVHLINSGRARFVGSRKTLAIVD
Ga0184643_11383362	3300019255	Groundwater Sediment	MPALATAPATAPATSAKPTRITTTLFDLVDALSAEVDPEEDYLVTAAVVHLINSGRARFAGSRKTLAIVDA
Ga0184643_13008161	3300019255	Groundwater Sediment	FTVLMITTDSLQGENVMPALATAPATVPATSAAPTRITTTLFDLVDALSAEVDPQEDYLVTAAVVHLINSGRARFVGSRKTLAIVDA
Ga0184643_14815332	3300019255	Groundwater Sediment	MPALATYPATIPAISAEPTRITRTLYDLVEALSTEVDPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA
Ga0184642_10808492	3300019279	Groundwater Sediment	MPALATYTATAPATSAEPTRITTTLYDLVEALNTEVDPADDYLVTAAVMHLINSGHARFVGSHKRLAIIDA
Ga0184642_14340382	3300019279	Groundwater Sediment	MPALATAPATVPATSAAPTRITTTLFDLVDALSAEVDPQEDYLVTAAVVHLINSGRAHFVGSRKTLAIVDA
Ga0187893_101978492	3300019487	Microbial Mat On Rocks	MPALATYPATTPASSSDSTSITTTLYDLVAALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Ga0194131_100699523	3300020193	Freshwater Lake	MAALATYPTTPAETTVAPARITTTLYDLVAALNEEVDPEDDALVTAAMVHLINANRARFAGSRKRLEIVEA
Ga0126371_104325032	3300021560	Tropical Forest Soil	MPALATYPAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Ga0222625_17469741	3300022195	Groundwater Sediment	MPALATYPAAIPAASSDPASITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA
Ga0207712_110183792	3300025961	Switchgrass Rhizosphere	MRALATYPATAPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA
Ga0209761_13314711	3300026313	Grasslands Soil	MPALATYPAATSAASSDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Ga0209879_10812531	3300027056	Groundwater Sand	MPALATYPATIPATSAEPTRITTTLYDLVEALNTEVEPADDYLVTAAVMHLINSGHARFVGSHKRLA
Ga0209899_10145172	3300027490	Groundwater Sand	MPALATYPATIPATSAEPTRITTTLYDLVEALSTEVDPADDYLVTAAVMHLINSGHARFVGSRKRLAIIDA
Ga0209887_10779581	3300027561	Groundwater Sand	IPATSAEPTRITTTLYDLVEALSTEVDPADDYLVTAAVMHLINSGHARFVGSRKRLAIID
Ga0209481_103585001	3300027880	Populus Rhizosphere	MPALATDPAATPAASSDPTSITTTLYELIGALNAEVDPEDDALVTAAVVHLINTNRARF
Ga0207428_102990972	3300027907	Populus Rhizosphere	MPALATCPAATPATSSDSASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDV
Ga0209857_10406031	3300027957	Groundwater Sand	MPALATYPATIPATSAEPTRITTTLYDLVEALNTEVEPADDYLVTAAVMHLINSGHARFVGSRKRLAIIDA
Ga0268265_108140171	3300028380	Switchgrass Rhizosphere	MPALATYPATAPATASETTSITTTLYDLVAALNTEVDAEDDALVTAAVVHLINANRARFIGSRKRLAIVDA
Ga0307504_100228681	3300028792	Soil	MPALATYPAAIPAASSDPASITTTLYDLIAALNAEVGPEDDALVTAAVVHLINANRTRFVGSRKRLAIVDA
Ga0247642_10469172	3300030537	Soil	MPALATYPATVPAIALETTTITTTLYDLVAALNTEVGAEDDALVTAAVVHLINTNRARFIGSRKRLAIVDA
Ga0247648_10028003	3300030574	Soil	ATYPATVPATALETMTITTTLYDLVAALNAEVDAEDDALVTAAVVHLINTNRARFIGSRKRLAIVDA
Ga0247651_100270191	3300030608	Soil	ATVPATALETMTITTTLYDLVAALNTEVGAEDDALVTAAVVHLINTNRARFIGSRKRLAIVDA
Ga0247657_100124613	3300030614	Soil	MPALATYPATVPATAFKTTTITTTLYDLVAALNTEVGAEDDALVTAAVVHLINTNRARFIGSRKRLAIVDA
Ga0247627_100586442	3300030635	Soil	GDDIMPALATYPATVPATALKTTTITTTLYDLVAALNTEVGAEDDALVTAAVVHLINTNRARFIGSRKRLAIVDA
Ga0102752_15609961	3300030783	Soil	RENIMPALATSPATVLATSAKPKRITTTLYDLVDALNAEVDPVDDALVTAAVVHLINSGRARFVGSRKTLAIVDA
Ga0308198_10532791	3300030904	Soil	ATPATSSDPASITTTLYDLVAALNAEVDPEDDALVTAAVVHLINSNRVRFVGSRKRLAIVDA
Ga0308190_11791581	3300030993	Soil	MPALATYPAAIPAASSDPASITTTLYDLIAALNAEVGPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA
Ga0073996_123386191	3300030998	Soil	MPALATAPAMAPATSAAPTRITTTLFDLVDALSAEVDPKEDYLVTAAVVHLINSGRAHFVGSRKTLAIVDA
Ga0102760_107141521	3300031039	Soil	MPALATVPATSAKSQRITTTLYDLVDALNTEVDPADDALVTAAVVHLINSGRARFVGSRKTLAIVDA
Ga0308201_102800751	3300031091	Soil	MPALATYPAAIPAASSDPVSITTTLYDLIAALNAEVDPEDDALVTAAVVHLINANHTRFVGSRKRLAIVDA
Ga0308204_102999492	3300031092	Soil	LHDNITAYEGDDIMPALATYPAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINSNRARFVGSRKRLAIVDA
Ga0308187_100725202	3300031114	Soil	MPALATYPAAIPAASSDPASLTTTLYDLIAALNAEVGPEDDALVTAAVVHLINGNRTRFVGSRKRLAIVDA
Ga0308187_102347031	3300031114	Soil	ITLTVLMITTDSLQGENIMPALATAPATVLATSAAPTRITTTLFDLVDALSAEVDPQDDYLVTAAVVHLINSGRAHFVGSRKTLAIVDA
Ga0306924_123275331	3300032076	Soil	MPALATHPATYPATTPVASSDSTCIRTTLYDLIAALNAEVDPEDDALVTAAVVHLINANRATFVGSRKRLAIVDA
Ga0310914_117930312	3300033289	Soil	MPALAAYTAATPAASLDQASITTTLYDLVEALNAEVNPEDDALVTAAVVHLINANRARFVGSRKRLAIVDA
Ga0370545_050324_12_272	3300034643	Soil	MSLYDDITADKGDDIMPALATYPAATLAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLINSNRSRFVGSRKRLAIVDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100618

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences