3300006742: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 3300006742
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052566 | Ga0101805
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58300398
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F061925	Metagenome	131	N
F067847	Metagenome	125	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F090517	Metagenome	108	N
F097527	Metagenome	104	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101805_100743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10788
Ga0101805_103294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	3100
Ga0101805_103384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3029
Ga0101805_107916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1405
Ga0101805_111803	All Organisms → cellular organisms → Bacteria → Proteobacteria	956
Ga0101805_113232	Not Available	861
Ga0101805_114740	All Organisms → cellular organisms → Bacteria	775
Ga0101805_117675	All Organisms → cellular organisms → Bacteria	651
Ga0101805_119620	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	584
Ga0101805_119865	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	575

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101805_100743	Ga0101805_1007434	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0101805_103294	Ga0101805_1032946	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKKGFHVCIPED*
Ga0101805_103384	Ga0101805_1033845	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMFWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0101805_107916	Ga0101805_1079161	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPC
Ga0101805_111803	Ga0101805_1118032	F061925	SEEAVSSVVTDLKNCELFSSSTMDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAVNSFSKNIFSALKSILTKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0101805_113232	Ga0101805_1132322	F077405	GRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*
Ga0101805_114740	Ga0101805_1147401	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYIENLVIKKNLLQSSVEAYKLD
Ga0101805_117675	Ga0101805_1176752	F051212	MTTSPDTQKTSISEKQNAEKIEKITYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKYSQLNNH*
Ga0101805_119620	Ga0101805_1196201	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKY
Ga0101805_119865	Ga0101805_1198651	F040685	PHRQEKKQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAKEFGKKSIYE*