3300006727: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0619 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006727
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092400 | Ga0031666
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0619 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87815375
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.65
  • Long. (^o): -11.81
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F006501	Metagenome / Metatranscriptome	371	N
F009426	Metagenome / Metatranscriptome	318	Y
F014836	Metagenome / Metatranscriptome	259	Y
F020014	Metagenome / Metatranscriptome	226	Y
F020545	Metatranscriptome	223	N
F027881	Metagenome / Metatranscriptome	193	Y
F037182	Metatranscriptome	168	Y
F052609	Metatranscriptome	142	Y
F063612	Metatranscriptome	129	Y
F068928	Metagenome / Metatranscriptome	124	Y
F076161	Metagenome / Metatranscriptome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031666_1000366	Not Available	1018
Ga0031666_1001403	Not Available	704
Ga0031666_1005694	Not Available	973
Ga0031666_1009274	Not Available	580
Ga0031666_1019854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	830
Ga0031666_1043526	Not Available	542
Ga0031666_1076825	Not Available	703
Ga0031666_1104236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	801
Ga0031666_1179684	Not Available	822
Ga0031666_1207382	Not Available	549
Ga0031666_1212016	Not Available	548
Ga0031666_1238809	All Organisms → cellular organisms → Eukaryota	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031666_1000366	Ga0031666_10003661	F027881	MSLTVARSERVRGVLTHASLTKTKFSFSSVRVSNILKFISLSLFK*
Ga0031666_1001403	Ga0031666_10014031	F027881	MSLTVARSERVRSVLTHASRTEILRLNFSGARVSKTLIIFNRIT*
Ga0031666_1005694	Ga0031666_10056942	F063612	CRRSAPKSVAGGSPADEAASVAEESGLKIPRRGTGSKEDVYSPAL*
Ga0031666_1007494	Ga0031666_10074941	F000075	SMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031666_1009274	Ga0031666_10092742	F009426	KVNKDLKLSSVMVAGETSYTIILFMTTGPCVIGAGAARETLFEGKADYCMIVCE*
Ga0031666_1019854	Ga0031666_10198541	F076161	LTPRNRRAEAHRFMKSINFSSRRPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERSNLLSSPTNPDALTGKPVRRLDQYAGPTRSQANP*
Ga0031666_1043526	Ga0031666_10435261	F052609	YSFDDAHDAVGGITKTFASFWENECQLIKESLVALDTRGTGRVSLKQFYGANADGEWRFGESEAYLRELGALDESSPWLGKQVIIPNYLQGASNCIVSTKHYLVCCVAECEAVLNEVEDAVGAPVAAPEQILPLVGNMTSLDDEPPKIDDALRTQLLRIAETHGGKVPLHGRLFAQWLHY
Ga0031666_1076825	Ga0031666_10768251	F014836	LLPSAVTMNKLVLLFIVVAFTGLCVAQCPLARDTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDDDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031666_1104236	Ga0031666_11042361	F000344	MRPKHPRAAESGVGKHTARESEGAKACAIGKERVANAHP
Ga0031666_1139745	Ga0031666_11397451	F037182	AIDTLHGPARGWIGPAMFINWATSHVAGKVAGNIEARSATGKMVDLYHIADYDKDDFLKAMKTAMADKTSPEYARFYEFLLTIFVEEDHDCRGVVSFEAFERLVARAAMVPRNFGLAPKETSTEKLKELYDSMEDTRMGGVTFRKFLQWSVEHLSKKIA*
Ga0031666_1179684	Ga0031666_11796841	F006501	RVIHRDCRDKELRMTKDANEKCQFLDFLTVPAALPSESADRKAKLAYGNTMMGYWCNKDEQMKACAAATDALAPVVKECNKKQTQFESEFCAIAIVYHAQCQDLNDVCYTATRAAYDTSVASTTKLVAKWKVEYSALKKINCFLDVWLSDGDANTVSSEKLAACKATDADASVMNIDFGTPLKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPELVQDVIHCHIEDPVAVSTTAGANTPAYR*
Ga0031666_1207382	Ga0031666_12073821	F020545	ADRIEFVLVNPIMLSTVSRSAVRTPAVRAFAAVPSPWGSDAWRYDKNAFQAWASEAVTKKGSAAQRELYGMLAMRFGDTDVDKDGKINAAEFDSLCEDVASLPRRFGLAPSLEKEYGNVERRTASRKAMFDMIDLRQGPARNWIGLEQFVRWAQDHIITKVGTIDASAEVDLYHVEQYGETQ
Ga0031666_1212016	Ga0031666_12120161	F068928	IIEALEAEIIRLKTQLSQTEDRLSEMRKKFDEMSIKLYGGRRN*
Ga0031666_1238809	Ga0031666_12388091	F020014	LDRLNKSYKDEPRPEYAPKKNSVNKPKAASPPTVATIQRGTLPISLILIIVIKK*