3300006718: Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006718
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054902 | Ga0005504
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132557595
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -32.4846
  • Long. (^o): 12.4609
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006551	Metagenome / Metatranscriptome	370	Y
F009426	Metagenome / Metatranscriptome	318	Y
F014836	Metagenome / Metatranscriptome	259	Y
F020371	Metagenome / Metatranscriptome	224	Y
F025846	Metagenome / Metatranscriptome	200	Y
F030135	Metagenome / Metatranscriptome	186	Y
F030551	Metagenome / Metatranscriptome	185	Y
F040684	Metagenome / Metatranscriptome	161	N
F042932	Metagenome / Metatranscriptome	157	N
F052640	Metagenome / Metatranscriptome	142	N
F052865	Metagenome / Metatranscriptome	142	Y
F056191	Metagenome / Metatranscriptome	138	Y
F060053	Metagenome / Metatranscriptome	133	N
F060086	Metagenome / Metatranscriptome	133	Y
F060973	Metagenome / Metatranscriptome	132	Y
F063613	Metatranscriptome	129	N
F065812	Metagenome / Metatranscriptome	127	Y
F066848	Metagenome / Metatranscriptome	126	N
F090440	Metagenome / Metatranscriptome	108	N
F097512	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005504_1003167	Not Available	1154
Ga0005504_1005822	Not Available	1186
Ga0005504_1016353	Not Available	866
Ga0005504_1017422	Not Available	875
Ga0005504_1020943	Not Available	561
Ga0005504_1042409	Not Available	766
Ga0005504_1042471	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	626
Ga0005504_1247341	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	597
Ga0005504_1247345	Not Available	685
Ga0005504_1263420	Not Available	682
Ga0005504_1264165	Not Available	587
Ga0005504_1273425	Not Available	725
Ga0005504_1278358	Not Available	521
Ga0005504_1280968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	544
Ga0005504_1287583	Not Available	1333
Ga0005504_1290752	Not Available	537
Ga0005504_1295101	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	630
Ga0005504_1296239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	521
Ga0005504_1296591	Not Available	772
Ga0005504_1301279	Not Available	617
Ga0005504_1306433	Not Available	770

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005504_1003167	Ga0005504_10031672	F060086	DPFELDSNLLLSSGRHGEDSKRQCIHLYDHETPLLDDLAD*
Ga0005504_1005822	Ga0005504_10058221	F040684	LTLVFSQGKPCCKNKSYKGKVACKFNRANIDLNKIGTVAENGTQIAVAGTQCPLSVQNTSINKKNCTNCAKSAWWKFWGKKKGCCNTNS*
Ga0005504_1016353	Ga0005504_10163531	F009426	AKVNKYLKLPSDMAISETSYTVILFMTTSPRVISAGAVIETLYEGKADYCMIVCE*
Ga0005504_1017422	Ga0005504_10174222	F042932	VDQEVITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAITTIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVHKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAIETVDKSFTKDFSPILKDAREQGYEGLNIVAQNILSGKYYKPTPEEIGGF*
Ga0005504_1020943	Ga0005504_10209431	F056191	LCEARVRHALTAEMSETFSSGGSMHASVKLEGIDGRAPQERVEHVA
Ga0005504_1042409	Ga0005504_10424091	F030135	GPKNREELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0005504_1042471	Ga0005504_10424712	F025846	MVNLTVAMDLVSMAHGHVTAMVTVPMAQMKPIVLLHHVKTRVSGIVVMESAYQHPMYVMAQVNFVTQAGLLTVLMAQMKA*
Ga0005504_1247341	Ga0005504_12473411	F063613	AGLLKEGSGECRAGLLVGLALKGSSGLLSLVVGSSTNLSLLLKSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0005504_1247345	Ga0005504_12473451	F052865	MSLKGYTSFVKKHMDLRNLGIVVLGLVLPSIAGWMTSTGVGSRVMSYVNMVPGMTTNVGKAVGAVALTAGVSYLAATWGIISATEALTANMIALGLVSVGVLQTMSLPVGGNFVSALPSAGISGLGASSYGYIGNYHGEGVGAELLESP
Ga0005504_1263420	Ga0005504_12634201	F014836	MNKLVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0005504_1264165	Ga0005504_12641651	F006551	VESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0005504_1273425	Ga0005504_12734251	F060973	MGNDRYLSILDEIKKSGGGSDITKNPNDKVLIIDG
Ga0005504_1278358	Ga0005504_12783582	F090440	LKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0005504_1280968	Ga0005504_12809682	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLAGARQIAADQRLPVDPVAKGAGSEPELDLVA*
Ga0005504_1287583	Ga0005504_12875832	F060053	MAFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELVGGYLANSPTTATVDVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLHISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
Ga0005504_1290752	Ga0005504_12907522	F097512	PRPNASPETVEKSYQTDFSPILKDAREAGHEGLSKVAQNILSGKYYKPSDDEVRGF*
Ga0005504_1295101	Ga0005504_12951011	F065812	MGDILLPRLNIDGKPIANKYCEGKMKRTLERGLKDLKPLKRKR*
Ga0005504_1296239	Ga0005504_12962391	F030551	NNGGKRMKNSIRNLIITAALVTGMFGIVNAQTEVSGEFSSDVTVGDATAFSTPYTGLSISGDGWELSTNLSDGDVIVEEAKYNFAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISTGVGVSTSAYGVGANAFYGDDNYWAARASYDVSAFGINSTIGLSVNSD
Ga0005504_1296591	Ga0005504_12965911	F052640	MVQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLN
Ga0005504_1301279	Ga0005504_13012791	F006551	ALGASTTGSYDPWAANATIDRDSSSTFDSTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0005504_1306433	Ga0005504_13064331	F020371	YVSDVKSGGRQRQAALRSSVNSSVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQG