Sample 3300006652

Overview

Basic Information
IMG/M Taxon OID	3300006652 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117429 \| Gp0123698 \| Ga0101729
Sample Name	Combined Assembly of Gp0123698, Gp0123960, Gp0123961
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	89253866
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	2
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	UK (Newcastle upon Tyne)
Coordinates	Lat. (^o)	54.971158	Long. (^o)	-1.703654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F048390	Metagenome / Metatranscriptome	148	Y
F050777	Metagenome / Metatranscriptome	145	N
F054136	Metagenome	140	Y
F059489	Metagenome / Metatranscriptome	134	Y
F064732	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F080090	Metagenome / Metatranscriptome	115	Y
F090409	Metagenome	108	Y
F091989	Metagenome / Metatranscriptome	107	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101729_1001675	All Organisms → cellular organisms → Bacteria → Proteobacteria	3717	Open in IMG/M
Ga0101729_1001936	All Organisms → cellular organisms → Bacteria	3461	Open in IMG/M
Ga0101729_1006113	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1941	Open in IMG/M
Ga0101729_1006713	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1839	Open in IMG/M
Ga0101729_1009893	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1486	Open in IMG/M
Ga0101729_1013450	Not Available	1246	Open in IMG/M
Ga0101729_1016290	Not Available	1113	Open in IMG/M
Ga0101729_1029283	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	770	Open in IMG/M
Ga0101729_1034049	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	698	Open in IMG/M
Ga0101729_1040564	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	619	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101729_1001675

All Organisms → cellular organisms → Bacteria → Proteobacteria

3717

Open in IMG/M

Ga0101729_1001936

All Organisms → cellular organisms → Bacteria

3461

Open in IMG/M

Ga0101729_1006113

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix

1941

Open in IMG/M

Ga0101729_1006713

All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon

1839

Open in IMG/M

Ga0101729_1009893

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix

1486

Open in IMG/M

Ga0101729_1013450

Not Available

1246

Open in IMG/M

Ga0101729_1016290

Not Available

1113

Open in IMG/M

Ga0101729_1029283

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112

770

698

619

Scaffold ID	Protein ID	Family	Sequence
Ga0101729_1001675	Ga0101729_10016752	F102132	METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEYDPMEDGDPNYYKKLEANNKDRRGIIR*
Ga0101729_1001936	Ga0101729_10019365	F048390	MVRFVRTLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVSPVKKGRYEVALKPTTIELNQSLKEV*
Ga0101729_1006113	Ga0101729_10061132	F064732	MEAAAGAALAAARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGIKSDRVSQ*
Ga0101729_1006713	Ga0101729_10067132	F059489	MTQSNDQHAVDVDTYISKNSRFKSFVYDRGEIRTIAENLGFKTDHVRTELRKLGYSLIKNSSHGRMIWKRDQLERTSLTIAGI*
Ga0101729_1009893	Ga0101729_10098933	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFSGAAFLWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*
Ga0101729_1013450	Ga0101729_10134502	F090409	LAKGSSNGGDRMKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0101729_1016290	Ga0101729_10162902	F050777	MEDDIIYEKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGPVSSLISIEGNLPEEVLAMQWLVPLGDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLESIEQEEEYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*
Ga0101729_1029283	Ga0101729_10292831	F106197	NNVWNSGNCKIHSEVLGMKRVLLCIPLLLLCISVDSVSADTISAQIDSFDFPSGDWYCGSNQGGANVWIKNTGDVGHLFWVSYEVMDRRGQWYSAPPESVYAEPGDSTYFVIPVWNIPDDAELGEYQADFYLYGYYDSRTGELSEQLDQVDQVRAFSVVG*
Ga0101729_1034049	Ga0101729_10340492	F064746	ALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDNGKVCVIDAFTTNNYGMSAWDIIDSITVTS*
Ga0101729_1040564	Ga0101729_10405641	F091989	VNCYATDAFKARDPLIRPFGEHEDQKASLRALQEATIGLCWVNSEGKLVPFNEAEFAGIQKEIAVLQAKIDHNTKILNELDSKVAELGLTEFSLAKLKGQKEKLRGQIAQIRSEESDALRHKWEAVVSLGGNRGTYDALPEVIEARAKAAAQIEPLEGEIKALNAQIRSLEAILSKFKR*
Ga0101729_1041997	Ga0101729_10419973	F080090	VEWSEPLRADKKLSNADSWREVHEEDQAALRPGLQDISISR
Ga0101729_1050106	Ga0101729_10501061	F020363	LTFGGMWRWRRVAVARVFALVVRCRVMRLSLYSRVGKNRDTKRESPAGAGAGRTADHLAVLFSQKILAVRRANDIYRPVRLSFIHSLISPLFRILRVKVQL*
Ga0101729_1052841	Ga0101729_10528412	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRITFKSFALQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD
Ga0101729_1052912	Ga0101729_10529121	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD

Scaffold ID

Protein ID

Family

Sequence

Ga0101729_1001675

Ga0101729_10016752

F102132

METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEYDPMEDGDPNYYKKLEANNKDRRGIIR*

Ga0101729_1001936

Ga0101729_10019365

F048390

MVRFVRTLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVSPVKKGRYEVALKPTTIELNQSLKEV*

Ga0101729_1006113

Ga0101729_10061132

F064732

MEAAAGAALAAARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGIKSDRVSQ*

Ga0101729_1006713

Ga0101729_10067132

F059489

MTQSNDQHAVDVDTYISKNSRFKSFVYDRGEIRTIAENLGFKTDHVRTELRKLGYSLIKNSSHGRMIWKRDQLERTSLTIAGI*

Ga0101729_1009893

Ga0101729_10098933

F054136

MIENKAQLLADLAYVGSKVQAKTNVYIFSGAAFLWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*

Ga0101729_1013450

Ga0101729_10134502

F090409

LAKGSSNGGDRMKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*

Ga0101729_1016290

Ga0101729_10162902

F050777

MEDDIIYEKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGPVSSLISIEGNLPEEVLAMQWLVPLGDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLESIEQEEEYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*

Ga0101729_1029283

Ga0101729_10292831

F106197

NNVWNSGNCKIHSEVLGMKRVLLCIPLLLLCISVDSVSADTISAQIDSFDFPSGDWYCGSNQGGANVWIKNTGDVGHLFWVSYEVMDRRGQWYSAPPESVYAEPGDSTYFVIPVWNIPDDAELGEYQADFYLYGYYDSRTGELSEQLDQVDQVRAFSVVG*

Ga0101729_1034049

Ga0101729_10340492

F064746

ALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDNGKVCVIDAFTTNNYGMSAWDIIDSITVTS*

Ga0101729_1040564

Ga0101729_10405641

F091989

VNCYATDAFKARDPLIRPFGEHEDQKASLRALQEATIGLCWVNSEGKLVPFNEAEFAGIQKEIAVLQAKIDHNTKILNELDSKVAELGLTEFSLAKLKGQKEKLRGQIAQIRSEESDALRHKWEAVVSLGGNRGTYDALPEVIEARAKAAAQIEPLEGEIKALNAQIRSLEAILSKFKR*

Ga0101729_1041997

Ga0101729_10419973

F080090

VEWSEPLRADKKLSNADSWREVHEEDQAALRPGLQDISISR

Ga0101729_1050106

Ga0101729_10501061

F020363

LTFGGMWRWRRVAVARVFALVVRCRVMRLSLYSRVGKNRDTKRESPAGAGAGRTADHLAVLFSQKILAVRRANDIYRPVRLSFIHSLISPLFRILRVKVQL*

Ga0101729_1052841

Ga0101729_10528412

F054136

MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRITFKSFALQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD

Ga0101729_1052912

Ga0101729_10529121

F054136

MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006652: Combined Assembly of Gp0123698, Gp0123960, Gp0123961

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences