3300006652: Combined Assembly of Gp0123698, Gp0123960, Gp0123961

Overview

Basic Information

• IMG/M Taxon OID: 3300006652
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0123698 | Ga0101729
• Sample Name: Combined Assembly of Gp0123698, Gp0123960, Gp0123961
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89253866
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	2
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F048390	Metagenome / Metatranscriptome	148	Y
F050777	Metagenome / Metatranscriptome	145	N
F054136	Metagenome	140	Y
F059489	Metagenome / Metatranscriptome	134	Y
F064732	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F080090	Metagenome / Metatranscriptome	115	Y
F090409	Metagenome	108	Y
F091989	Metagenome / Metatranscriptome	107	Y
F102132	Metagenome	102	Y
F106197	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101729_1001675	All Organisms → cellular organisms → Bacteria → Proteobacteria	3717
Ga0101729_1001936	All Organisms → cellular organisms → Bacteria	3461
Ga0101729_1006113	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1941
Ga0101729_1006713	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1839
Ga0101729_1009893	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1486
Ga0101729_1013450	Not Available	1246
Ga0101729_1016290	Not Available	1113
Ga0101729_1029283	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	770
Ga0101729_1034049	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	698
Ga0101729_1040564	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	619
Ga0101729_1041997	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	604
Ga0101729_1050106	Not Available	532
Ga0101729_1052841	Not Available	511
Ga0101729_1052912	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101729_1001675	Ga0101729_10016752	F102132	METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEYDPMEDGDPNYYKKLEANNKDRRGIIR*
Ga0101729_1001936	Ga0101729_10019365	F048390	MVRFVRTLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVSPVKKGRYEVALKPTTIELNQSLKEV*
Ga0101729_1006113	Ga0101729_10061132	F064732	MEAAAGAALAAARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGIKSDRVSQ*
Ga0101729_1006713	Ga0101729_10067132	F059489	MTQSNDQHAVDVDTYISKNSRFKSFVYDRGEIRTIAENLGFKTDHVRTELRKLGYSLIKNSSHGRMIWKRDQLERTSLTIAGI*
Ga0101729_1009893	Ga0101729_10098933	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFSGAAFLWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*
Ga0101729_1013450	Ga0101729_10134502	F090409	LAKGSSNGGDRMKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0101729_1016290	Ga0101729_10162902	F050777	MEDDIIYEKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGPVSSLISIEGNLPEEVLAMQWLVPLGDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLESIEQEEEYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*
Ga0101729_1029283	Ga0101729_10292831	F106197	NNVWNSGNCKIHSEVLGMKRVLLCIPLLLLCISVDSVSADTISAQIDSFDFPSGDWYCGSNQGGANVWIKNTGDVGHLFWVSYEVMDRRGQWYSAPPESVYAEPGDSTYFVIPVWNIPDDAELGEYQADFYLYGYYDSRTGELSEQLDQVDQVRAFSVVG*
Ga0101729_1034049	Ga0101729_10340492	F064746	ALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDNGKVCVIDAFTTNNYGMSAWDIIDSITVTS*
Ga0101729_1040564	Ga0101729_10405641	F091989	VNCYATDAFKARDPLIRPFGEHEDQKASLRALQEATIGLCWVNSEGKLVPFNEAEFAGIQKEIAVLQAKIDHNTKILNELDSKVAELGLTEFSLAKLKGQKEKLRGQIAQIRSEESDALRHKWEAVVSLGGNRGTYDALPEVIEARAKAAAQIEPLEGEIKALNAQIRSLEAILSKFKR*
Ga0101729_1041997	Ga0101729_10419973	F080090	VEWSEPLRADKKLSNADSWREVHEEDQAALRPGLQDISISR
Ga0101729_1050106	Ga0101729_10501061	F020363	LTFGGMWRWRRVAVARVFALVVRCRVMRLSLYSRVGKNRDTKRESPAGAGAGRTADHLAVLFSQKILAVRRANDIYRPVRLSFIHSLISPLFRILRVKVQL*
Ga0101729_1052841	Ga0101729_10528412	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRITFKSFALQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD
Ga0101729_1052912	Ga0101729_10529121	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD