3300006502: Human stool microbial communities from NIH, USA - visit 1, subject 764588959

Overview

Basic Information

• IMG/M Taxon OID: 3300006502
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052541 | Ga0100528
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764588959
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164448925
• Sequencing Scaffolds: 11
• Novel Protein Genes: 30
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F042095	Metagenome	159	N
F047125	Metagenome / Metatranscriptome	150	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F055715	Metagenome	138	N
F055775	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F068855	Metagenome	124	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F078693	Metagenome	116	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100528_100124	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	144491
Ga0100528_100238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	94701
Ga0100528_100603	Not Available	44852
Ga0100528_100978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26924
Ga0100528_102759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	8076
Ga0100528_104248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	5049
Ga0100528_105349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4021
Ga0100528_105713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3751
Ga0100528_107349	All Organisms → cellular organisms → Bacteria	2923
Ga0100528_116862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1199
Ga0100528_127903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	673

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100528_100124	Ga0100528_10012410	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDEYLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE*
Ga0100528_100124	Ga0100528_100124140	F076653	MTIRDKYFGWKDIFFGRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKDLRTFIYRGIVFFLDRIWHTSLFDRMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0100528_100124	Ga0100528_100124151	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD*
Ga0100528_100124	Ga0100528_100124171	F078005	MEKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN*
Ga0100528_100124	Ga0100528_10012418	F057001	MISKEINKVQNEIEKSSEKTLTGAIKAWCQLFKSSKEVNEILKENEIKVDKSIVPALVNLAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR*
Ga0100528_100124	Ga0100528_10012423	F083452	MSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDTDPRKGLVRIRDGAGFREVERGGCLHQNYLNLLEEELGTKLSIDLMDKYIKRNI*
Ga0100528_100124	Ga0100528_10012427	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPLTGDGNTAIK*
Ga0100528_100124	Ga0100528_1001243	F085718	MVIEFDFEIYKPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV*
Ga0100528_100124	Ga0100528_10012443	F058555	MGTKIGILHIMKSNFDKILTERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG*
Ga0100528_100124	Ga0100528_10012449	F093883	MMEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKLLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDIIKNNINSI*
Ga0100528_100124	Ga0100528_1001245	F078006	MDNTLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLATALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0100528_100124	Ga0100528_10012456	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDESAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKVNVLDEYEELMSISNIDDKTKIKKVNDVKKKEDVDEGDKVNTEE*
Ga0100528_100124	Ga0100528_10012457	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFR*
Ga0100528_100124	Ga0100528_10012463	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRKDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNVGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQALELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITVFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVHASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0100528_100124	Ga0100528_10012465	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDNFK*
Ga0100528_100124	Ga0100528_10012468	F075481	MRLRISLRAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRRIVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTADSLGVNKTRNDIKDLDNKTNIKSKDVDDRKESRWPIVWIVAGILMILLVLVYILKKTKIL*
Ga0100528_100124	Ga0100528_10012471	F106193	VGCNTCREKALRAERERIERSMMNHSSSTVVSDREYASRSTAGCMVMQDPLQTMERDVVSIYRQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSKHIKP*
Ga0100528_100124	Ga0100528_10012488	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI*
Ga0100528_100124	Ga0100528_10012496	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDNENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGVTHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0100528_100124	Ga0100528_10012499	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMCDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW*
Ga0100528_100238	Ga0100528_10023886	F051936	QEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISKKMLIVRHLSIHIYIKK*
Ga0100528_100603	Ga0100528_10060354	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTRDSPKYTIDIINANSGAVEAIALN*
Ga0100528_100978	Ga0100528_10097827	F029444	MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0100528_102759	Ga0100528_1027591	F070093	NFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPKLNPN*
Ga0100528_104248	Ga0100528_1042486	F068855	VPIISKCPSSSVPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW*
Ga0100528_105349	Ga0100528_1053492	F055715	LTKANEFDKINELLIERTAKKFERVSKNKLKKFLTNEKFCDKINELIQVGTAEILDN*
Ga0100528_105713	Ga0100528_1057133	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRREIIRQEGKRRGWWS*
Ga0100528_107349	Ga0100528_1073493	F073656	MTMEQDQEQMQGALYVAVDDDNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTADAALLPRIEAAEHRYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVILEDLRRCRAVETERGTVLFTQERDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGESLYVSNGIRDLTGLQIIMQRGYGYLMQNAEKYWNREFVFRSGFDNIERKYASDLSDEGRTAKREEQYNLAAYILDRKFPIRRQPSAEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0100528_116862	Ga0100528_1168622	F078693	MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS*
Ga0100528_127903	Ga0100528_1279031	F026592	CLRTASPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE*