3300006477: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629

Overview

Basic Information

• IMG/M Taxon OID: 3300006477
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052507 | Ga0100232
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127012939
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F077405	Metagenome	117	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F095633	Metagenome	105	N
F097527	Metagenome	104	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100232_100171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	54737
Ga0100232_100249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	42902
Ga0100232_100352	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	33072
Ga0100232_100523	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	25556
Ga0100232_100525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	25436
Ga0100232_100829	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	18593
Ga0100232_101013	Not Available	15800
Ga0100232_101339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	12533
Ga0100232_102770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	7058
Ga0100232_102951	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	6701
Ga0100232_103542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5712
Ga0100232_104628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4538
Ga0100232_105931	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	3644
Ga0100232_108878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	2490
Ga0100232_113108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1701
Ga0100232_117876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1242
Ga0100232_118339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1211
Ga0100232_125867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	852
Ga0100232_125904	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	851
Ga0100232_126212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	843
Ga0100232_136054	Not Available	605

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100232_100171	Ga0100232_10017154	F081510	MKFDLNTIKASTKSALVTTKILGKKYAPYVLLGAGLIGYGYSVYEGIKSGKKLEATKAKYEQMDAVGEEYTRMDVVKDITKDVAIPVAVATASTASIILGFAIQTNRLKAVSSALAIVTEEHARYRLRAKTVLDEETFKKVDAPLETKTVNVDGEDIEVESIIPNEGDLYGMWFKHSHKYASDSPEYNEGVIKEADKVLTEKMMRSGMLTFAEVLDILGFEVPRAALPFGWTDTDGFYIEWDAHEVWNDDKQETEIQFYVRWKTPRNLYATTSFKDFIPKKTRKELN*
Ga0100232_100249	Ga0100232_10024938	F105376	MKMNKNKKGGDMEPDVSAKEFGALQAKVEYIKDGVDKHTATLERIENIARANVAQAQLKTYITEHEQESEKKYVKRSEIEGVMNFWSLVTSNLAKLFAVALVGLAIYATNNLIQQNKAITELQEEVQTQVRRK*
Ga0100232_100352	Ga0100232_10035231	F080164	MRPTSFVLSLLLGMVGLAPCAAQQVTLRERALAFPLITEKAPSEIYEPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKVEKPLLYKGQAGQLVLCEYYESHRGDLFLDVANARPEIFGELCPVIDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0100232_100352	Ga0100232_10035232	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDEVEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFMLTLVDGRSLVAEVPLY*
Ga0100232_100523	Ga0100232_1005237	F032313	MYRFLILIFALTLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAIRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK*
Ga0100232_100523	Ga0100232_1005238	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0100232_100525	Ga0100232_10052512	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGE*
Ga0100232_100829	Ga0100232_1008294	F068942	MIRKILSLPTLALCFTLGSAFFAGCNENYIEGFVTEVRWSNVKNPKYGEYINIRLKAEGETFTTVGNHSWISFSGSVSTLDTFTRHRFSEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ*
Ga0100232_101013	Ga0100232_1010139	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPVFVDVQCVEYTGGNLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0100232_101339	Ga0100232_10133914	F046433	MIELPTSPDALSELSPMAPPKLLSQAQDASRNNTVTYVADDGYMGTMTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHLLEVDNKPVYVDVGNSLSQCRVKKEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0100232_102770	Ga0100232_1027706	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDRE*
Ga0100232_102951	Ga0100232_1029513	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKRKK*
Ga0100232_103542	Ga0100232_1035424	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0100232_104628	Ga0100232_1046287	F094007	MLLIRTVMLCRWTDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARSIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0100232_105931	Ga0100232_1059313	F072446	MSSKLHNLRSFTPRHIHYQNRSGLGMTTGPKHSTTNLTIPLRIYKLGDTLLKNIPPMKKLLFLLSSLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPERTTYRVPVIPRSVEDRTKKEYNDMELGKEAHLVFRATVHGDTINRHKKGLKALSLQLNRLTETSLGTSPVLCGVKSIEAVGIAENGNTYDLRAEMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLGSIREDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTTLWPLPDYKYNEREL*
Ga0100232_108878	Ga0100232_1088782	F095633	MGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAVHSYEPIPVEINTKRLIATAFLDDEGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN*
Ga0100232_113108	Ga0100232_1131084	F097527	MIYFKMEKIGNSTKTEKKKTRSENLVFITIPAAGVEPARPCGQ
Ga0100232_117876	Ga0100232_1178762	F073671	MEKEHAEHELSELHEKERSLEKALEIVREKIRELVNYTDKNKVQK*
Ga0100232_118339	Ga0100232_1183391	F077405	RPRPWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQKQKARLK*
Ga0100232_125867	Ga0100232_1258672	F095629	MRELIICLCLLGCFSIANANNVEQSKEVKIVHNDDSIILHKKIYQLEKRIERLEELLKKEGK*
Ga0100232_125904	Ga0100232_1259041	F080166	LNYYITFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSSRGEKVGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK*
Ga0100232_126212	Ga0100232_1262123	F089055	MNSTPECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKIATRCLY*
Ga0100232_136054	Ga0100232_1360542	F103431	MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG*