3300006301: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 3300006301
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052468 | Ga0099617
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79615556
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F040685	Metagenome	161	N
F043991	Metagenome	155	N
F051211	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F063778	Metagenome	129	Y
F067847	Metagenome	125	N
F071328	Metagenome	122	N
F071329	Metagenome	122	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F090517	Metagenome	108	N
F103436	Metagenome	101	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099617_100284	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11592
Ga0099617_100378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10359
Ga0099617_100485	All Organisms → Viruses	9253
Ga0099617_101825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4509
Ga0099617_103653	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2976
Ga0099617_105495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	2282
Ga0099617_106255	All Organisms → Viruses → Predicted Viral	2091
Ga0099617_106269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2088
Ga0099617_107744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1802
Ga0099617_108734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1656
Ga0099617_112159	All Organisms → cellular organisms → Bacteria	1301
Ga0099617_113269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1221
Ga0099617_124687	All Organisms → cellular organisms → Bacteria	757
Ga0099617_131697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	619
Ga0099617_135511	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	563
Ga0099617_135773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099617_100284	Ga0099617_10028413	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099617_100284	Ga0099617_10028420	F018385	MAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVNKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0099617_100284	Ga0099617_1002849	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAMTVILYTISAE*
Ga0099617_100378	Ga0099617_1003782	F051214	MPGKIIAHHTHLRIDTEFIELRDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0099617_100485	Ga0099617_1004852	F105377	VRDFDSLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERSWRLWQTTAKVYVGGELRTVQAIRARYRDV*
Ga0099617_101825	Ga0099617_1018254	F103436	MITTSKGGWRYKSDDEIFDSLRDWVMKCDLKYSKDDALGKIARASALWGGADYVTAVHLLDENKPYFKKSDWPYYALGIEILRARKHEFFNE*
Ga0099617_103653	Ga0099617_1036536	F027205	VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKDPRETLHPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRK*
Ga0099617_105495	Ga0099617_1054955	F077405	AGTDRGARPWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0099617_106255	Ga0099617_1062556	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED*
Ga0099617_106269	Ga0099617_1062691	F105377	VRDFDNLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLIRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRGI*
Ga0099617_107744	Ga0099617_1077443	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099617_107744	Ga0099617_1077444	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPLYVYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0099617_108734	Ga0099617_1087342	F063778	MPETISEGAKQQLLQQLQDALGLVADADTSANDVAAITHSAADGHQLTEVMLQEMTAARGCLKLCADQIEYAISNIEAIPLDPPPED*
Ga0099617_112159	Ga0099617_1121592	F071328	MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIAPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0099617_113269	Ga0099617_1132692	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEFSSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELLKEVSLPNTPKNWEAFTKKINLDKFKELKDGPSEQAVDGRGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0099617_124687	Ga0099617_1246872	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKICRQQYERHVILRVFIDEFAYDVDPSIDIGLTPTLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0099617_131697	Ga0099617_1316971	F054111	DNITHETFLKLIEHLKNLQEFTFLEYIIAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0099617_135511	Ga0099617_1355111	F090517	MNRRIFSFCGLLLGLLFLSSSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL*
Ga0099617_135773	Ga0099617_1357732	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLCLSVSLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYG