Sample 3300005733

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300005733

3300005733: Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14

Overview

Basic Information
IMG/M Taxon OID	3300005733 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114816 \| Gp0117150 \| Ga0076921
Sample Name	Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14
Sequencing Status	Permanent Draft
Sequencing Center	University of Wisconsin, Madison
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	63483714
Sequencing Scaffolds	19
Novel Protein Genes	21
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	5
Not Available	7
All Organisms → Viruses → environmental samples → uncultured marine virus	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1
All Organisms → Viruses → environmental samples → uncultured virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Degradation Of Oil
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003237	Metagenome / Metatranscriptome	498	Y
F004192	Metagenome / Metatranscriptome	449	Y
F005706	Metagenome / Metatranscriptome	392	N
F006373	Metagenome	375	Y
F016060	Metagenome / Metatranscriptome	250	Y
F021436	Metagenome / Metatranscriptome	219	N
F027683	Metagenome	194	Y
F042424	Metagenome / Metatranscriptome	158	Y
F045157	Metagenome / Metatranscriptome	153	Y
F058520	Metagenome	135	N
F063076	Metagenome / Metatranscriptome	130	Y
F065231	Metagenome / Metatranscriptome	128	N
F070657	Metagenome / Metatranscriptome	123	Y
F073435	Metagenome / Metatranscriptome	120	N
F074032	Metagenome	120	N
F076257	Metagenome / Metatranscriptome	118	N
F079338	Metagenome	116	Y
F084313	Metagenome / Metatranscriptome	112	N
F091847	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0076921_102070	All Organisms → Viruses → Predicted Viral	4006	Open in IMG/M
Ga0076921_102207	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
Ga0076921_103326	All Organisms → cellular organisms → Bacteria	3659	Open in IMG/M
Ga0076921_104758	All Organisms → cellular organisms → Bacteria	4473	Open in IMG/M
Ga0076921_110777	Not Available	1137	Open in IMG/M
Ga0076921_111484	Not Available	992	Open in IMG/M
Ga0076921_112151	All Organisms → Viruses → environmental samples → uncultured marine virus	548	Open in IMG/M
Ga0076921_114019	Not Available	2393	Open in IMG/M
Ga0076921_116191	All Organisms → cellular organisms → Bacteria	2753	Open in IMG/M
Ga0076921_116829	All Organisms → Viruses → environmental samples → uncultured marine virus	1311	Open in IMG/M
Ga0076921_131166	Not Available	3621	Open in IMG/M
Ga0076921_134125	Not Available	1068	Open in IMG/M
Ga0076921_136557	Not Available	695	Open in IMG/M
Ga0076921_137244	All Organisms → Viruses → environmental samples → uncultured marine virus	543	Open in IMG/M
Ga0076921_137814	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281	849	Open in IMG/M
Ga0076921_139122	Not Available	729	Open in IMG/M
Ga0076921_154254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	684	Open in IMG/M
Ga0076921_155067	All Organisms → Viruses → environmental samples → uncultured virus	2650	Open in IMG/M
Ga0076921_169483	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0076921_102070	Ga0076921_1020701	F045157	VLKAGVAKSDVSSGREQVRNKINTLRKTGHIKDAQSAIADMINLKSQQRK*
Ga0076921_102207	Ga0076921_1022073	F063076	MIYINRKDDFGNLETVDQFNQGRKYAKEMLKEYRLSDPSAYYYMSQRPCKDWQLEAVQQ*
Ga0076921_103326	Ga0076921_1033265	F042424	MFKFKVDIFNEISWQKFTQLPQISPLPLNEQIRKYNLYINELTYERNVYLHWLEGHKKGPRVETTPTPPVEEGFLLQENLFDLLQETGDKIIIT*
Ga0076921_103964	Ga0076921_1039643	F091847	MNNSNFWLTYEPEGKFNLLELANTQRAITNFVKILTEKEIKVDF
Ga0076921_104758	Ga0076921_1047581	F073435	TIMEEKNEQLRLTNSRLKALRKSTGQSIIDFFQMNDQKSEAGSRIDDYWYSGETFEMMSDDEFQIEQILMEAGAYGLRSEVDHYAKRLLEKNPLSSRVDAYVKAYHELIKD*
Ga0076921_110777	Ga0076921_1107772	F004192	MKQDFNEWMANIGNIYYADNRLMSQAFEKIEEYEEI*
Ga0076921_111484	Ga0076921_1114841	F073435	TIMEEKNEQLRLTNSRLKALRKSTGQSIIDFFQMNDQKNEAGNRIDDYWYSGETFEMMSDDEFQIEQILMEAGAYGLRSEVDHYAKRLLEKNPLSSRVDAYVKAYHELIKD*
Ga0076921_112151	Ga0076921_1121512	F076257	KKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKEPDELDRLLKKLCHEETTRNFYKGPRGKSLQMLDMSKEYCKNILNAGQSLTTVWKTIEIEMSKEKINTSTIPKPEFLAITK*
Ga0076921_114019	Ga0076921_1140191	F021436	MNQYDPKHIDKALKRMEKSDTLKSIPRPDTNIMSFFNDIEEDNQLDKQKTAAELKKEQYLEKVNSLKKLVKNVGTEDEINRLTAIGALIETTNFLNLKPDRKKILKENMVWCNEIYKQYINE
Ga0076921_116191	Ga0076921_1161914	F005706	MKQSKILTALGLSSLDIQNMLMNGLTMPEIAKKYNITYISLVQAFKIQKKDFKYIDYIQPKEEVKDIKNVSFAFDKLYTEESLNEDELLAYYKYEQKNKAYYEHT*
Ga0076921_116829	Ga0076921_1168292	F016060	GKMRQALLDYELAIKEMELKYNTKIDELELKRRSMLEQTDLQKSGDLMGQIVRGQKQFFNNGQGNTNQGGQESSATAGRSPSKESI*
Ga0076921_131166	Ga0076921_1311661	F006373	MKKLLILICLLWNTTSYADMEKYDLFGMTMPMMCGLPATVDQYIKDKGFIAINVSFGKENAKEDGEIVFAIKYYINDNLQTLAVAESPLDPYKCMIFHTFDMIMNKNLLEG
Ga0076921_134125	Ga0076921_1341252	F070657	MFDSVLRFFTDELSGSECAIILRNGEEICVTADEAWDIEAASQARQDAYELRCERGW*
Ga0076921_136557	Ga0076921_1365573	F027683	TEHGTLILKFLKKMNNGTNNFKRRTLSISSCHKADDGTYILIGTSRLHGDMRDTPRKTKRIRRNPKPTHHE*
Ga0076921_137244	Ga0076921_1372441	F065231	GLEKLTLRVDGMMNNKVNINRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0076921_137814	Ga0076921_1378142	F058520	ATNSFYNGSYSDDKQFYSDSDFQNNIEIRTQDKKEYNFLLIRPGEKKGKYILIIKDNDKDFNFSIMGSFLFKEDIPERLTDFGYPNRPPAYKILIKELTNMEENVRQDQF*
Ga0076921_139122	Ga0076921_1391221	F084313	MPNETRPQAPTAGFQTLWVQRQLKKLKERTEALKAQYIKPTDIL*
Ga0076921_140799	Ga0076921_1407993	F003237	CLKMKREASRNMNMDNKQFMCGEVQAELETNVDGSLTIKKIIKNKQQQKYIY
Ga0076921_154254	Ga0076921_1542541	F074032	IKEIEKSFAGKLERLTPGELVNKIYKAKNIEEIRRLKNILSKDPEVYQAFQRSVLTDLNESVLKSSDRLGMKILDASSFDKYLYGAGERGYRVALKEIFGDNFVGNLDNLNKALQISARRQPPKSMGVFGSAFSDIIRARLGQFTLSGRLFTASRRIYAKAAERVMANALLNPTSLKELISLRNFKPNTKEAIAILSKLDGSIFIKDNFEESKPFTAIANTLFGDARN
Ga0076921_155067	Ga0076921_1550672	F079338	MAAGRISNYRPLKSGGSLKAFYDDIVYWEMAKRSNKFYVTFMKGEYGFPNNKQESIATMEITYPHVEQGYNSSTGSFQTGYNRVSNPPNVFQQTSESLAVGSSIRNSHQYNGFITITEINSKRYWQSTITSSVSVTRTYDYQVNDSVLGTTTQSRTVEATYFYPFSSHQLSVLRDEPTLIVDLNKESELDEGLGDSGFVLIPQNCHPKVKNNIEYYLEKAGLIDKTTKFKNQSPRR*
Ga0076921_169483	Ga0076921_1694831	F002495	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*

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