Metagenome / Metatranscriptome Family F065231

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065231
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	41 residues
Representative Sequence	MMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Number of Associated Samples	91
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.56 %
% of genes near scaffold ends (potentially truncated)	96.09 %
% of genes from short scaffolds (< 2000 bps)	92.19 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.469 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (39.844 % of family members)
Environment Ontology (ENVO)	Unclassified (52.344 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (71.094 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.00% β-sheet: 0.00% Coil/Unstructured: 35.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF08291	Peptidase_M15_3	28.12
PF03237	Terminase_6N	3.91
PF01510	Amidase_2	1.56
PF11753	DUF3310	0.78
PF05133	Phage_prot_Gp6	0.78
PF04545	Sigma70_r4	0.78
PF00166	Cpn10	0.78
PF00476	DNA_pol_A	0.78
PF01726	LexA_DNA_bind	0.78
PF03567	Sulfotransfer_2	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
All Organisms	root	All Organisms	43.75 %
unclassified Hyphomonas	no rank	unclassified Hyphomonas	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Viruses	superkingdom	All Organisms → Viruses	29.69 %
cellular organisms	root	All Organisms → cellular organisms	14.06 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	13.28 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	10.16 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	10.16 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.34 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.78 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	10.16 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10.16 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.78 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	9.38 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.78 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.78 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.78 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	3.12 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	2.34 %
uncultured phage MedDCM-OCT-S08-C582	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C582	0.78 %
Pusillimonas (ex Stolz et al. 2005)	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005)	0.78 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.78 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	3.12 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	2.34 %
unclassified Pusillimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas	0.78 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	0.78 %
uncultured phage MedDCM-OCT-S08-C582	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C582	0.78 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.47 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	3.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.91 %
Pelagibacter phage HTVC010P	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	3.12 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	2.34 %
Pusillimonas sp. (ex Stolz et al. 2005)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)	0.78 %
Flavobacteriales bacterium TMED228	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	0.78 %
uncultured phage MedDCM-OCT-S08-C582	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C582	0.78 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10108339	Not Available	999	Open in IMG/M
3300000117\|DelMOWin2010_c10180971	Not Available	665	Open in IMG/M
3300001419\|JGI11705J14877_10174216	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300001419\|JGI11705J14877_10177251	Not Available	560	Open in IMG/M
3300001419\|JGI11705J14877_10189687	Not Available	533	Open in IMG/M
3300001963\|GOS2229_1003909	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300005215\|Ga0069001_10142983	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005512\|Ga0074648_1007915	All Organisms → cellular organisms → Bacteria	7531	Open in IMG/M
3300005512\|Ga0074648_1070973	Not Available	1365	Open in IMG/M
3300005512\|Ga0074648_1119735	Not Available	873	Open in IMG/M
3300005611\|Ga0074647_1008714	Not Available	2039	Open in IMG/M
3300005733\|Ga0076921_137244	All Organisms → Viruses → environmental samples → uncultured marine virus	543	Open in IMG/M
3300005748\|Ga0076925_1036786	All Organisms → Viruses → environmental samples → uncultured marine virus	577	Open in IMG/M
3300006025\|Ga0075474_10131176	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300006026\|Ga0075478_10073516	All Organisms → Viruses → Predicted Viral	1104	Open in IMG/M
3300006027\|Ga0075462_10106065	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300006027\|Ga0075462_10111802	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	845	Open in IMG/M
3300006027\|Ga0075462_10124059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	796	Open in IMG/M
3300006027\|Ga0075462_10258818	Not Available	514	Open in IMG/M
3300006400\|Ga0075503_1005273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	800	Open in IMG/M
3300006402\|Ga0075511_1782153	Not Available	1025	Open in IMG/M
3300006637\|Ga0075461_10057763	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	1251	Open in IMG/M
3300006637\|Ga0075461_10095223	Not Available	938	Open in IMG/M
3300006802\|Ga0070749_10764386	Not Available	514	Open in IMG/M
3300006802\|Ga0070749_10785022	Not Available	506	Open in IMG/M
3300006810\|Ga0070754_10154639	Not Available	1094	Open in IMG/M
3300006810\|Ga0070754_10314903	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	699	Open in IMG/M
3300006867\|Ga0075476_10140551	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	906	Open in IMG/M
3300006916\|Ga0070750_10305197	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	680	Open in IMG/M
3300006916\|Ga0070750_10489251	Not Available	505	Open in IMG/M
3300006919\|Ga0070746_10459357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	564	Open in IMG/M
3300007234\|Ga0075460_10281577	Not Available	548	Open in IMG/M
3300007234\|Ga0075460_10285823	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300007236\|Ga0075463_10214575	Not Available	619	Open in IMG/M
3300007345\|Ga0070752_1252114	Not Available	686	Open in IMG/M
3300007345\|Ga0070752_1394945	Not Available	512	Open in IMG/M
3300007346\|Ga0070753_1279956	Not Available	600	Open in IMG/M
3300007538\|Ga0099851_1113397	All Organisms → Viruses → Predicted Viral	1027	Open in IMG/M
3300007538\|Ga0099851_1142250	Not Available	897	Open in IMG/M
3300007538\|Ga0099851_1236679	Not Available	656	Open in IMG/M
3300007539\|Ga0099849_1242274	Not Available	665	Open in IMG/M
3300007539\|Ga0099849_1278371	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	608	Open in IMG/M
3300007542\|Ga0099846_1337294	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300007609\|Ga0102945_1080306	Not Available	601	Open in IMG/M
3300007623\|Ga0102948_1256971	Not Available	533	Open in IMG/M
3300007640\|Ga0070751_1102995	Not Available	1178	Open in IMG/M
3300007778\|Ga0102954_1065418	Not Available	1010	Open in IMG/M
3300008012\|Ga0075480_10598814	Not Available	522	Open in IMG/M
3300009000\|Ga0102960_1011950	Not Available	3281	Open in IMG/M
3300009000\|Ga0102960_1264223	Not Available	609	Open in IMG/M
3300009001\|Ga0102963_1063156	Not Available	1525	Open in IMG/M
3300009001\|Ga0102963_1312008	Not Available	619	Open in IMG/M
3300009027\|Ga0102957_1119780	Not Available	925	Open in IMG/M
3300009027\|Ga0102957_1321107	Not Available	569	Open in IMG/M
3300009423\|Ga0115548_1090001	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300009515\|Ga0129286_10191858	Not Available	684	Open in IMG/M
3300009529\|Ga0114919_10911205	Not Available	593	Open in IMG/M
3300009529\|Ga0114919_11181639	Not Available	512	Open in IMG/M
3300010296\|Ga0129348_1045315	Not Available	1590	Open in IMG/M
3300010297\|Ga0129345_1131710	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300010297\|Ga0129345_1265620	Not Available	598	Open in IMG/M
3300010299\|Ga0129342_1324353	Not Available	527	Open in IMG/M
3300010300\|Ga0129351_1307717	Not Available	599	Open in IMG/M
3300010300\|Ga0129351_1335701	Not Available	568	Open in IMG/M
3300010318\|Ga0136656_1320949	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010368\|Ga0129324_10293879	All Organisms → Viruses → environmental samples → uncultured marine virus	640	Open in IMG/M
3300010430\|Ga0118733_109223459	Not Available	508	Open in IMG/M
3300016735\|Ga0182074_1576156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300016771\|Ga0182082_1354961	Not Available	603	Open in IMG/M
3300017950\|Ga0181607_10012541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6721	Open in IMG/M
3300017964\|Ga0181589_10094437	Not Available	2174	Open in IMG/M
3300017964\|Ga0181589_10447625	Not Available	843	Open in IMG/M
3300017971\|Ga0180438_10586322	Not Available	827	Open in IMG/M
3300017991\|Ga0180434_10510235	Not Available	923	Open in IMG/M
3300018041\|Ga0181601_10713135	Not Available	504	Open in IMG/M
3300018080\|Ga0180433_10723740	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300018080\|Ga0180433_11001864	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	610	Open in IMG/M
3300018420\|Ga0181563_10123199	All Organisms → Viruses → Predicted Viral	1664	Open in IMG/M
3300018421\|Ga0181592_10128035	unclassified Hyphomonas → Hyphomonas sp.	1951	Open in IMG/M
3300018421\|Ga0181592_10767648	Not Available	638	Open in IMG/M
3300018421\|Ga0181592_10816946	All Organisms → Viruses → environmental samples → uncultured marine virus	613	Open in IMG/M
3300019751\|Ga0194029_1001571	All Organisms → cellular organisms → Bacteria	2915	Open in IMG/M
3300019765\|Ga0194024_1032249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	1139	Open in IMG/M
3300021356\|Ga0213858_10397685	Not Available	647	Open in IMG/M
3300021356\|Ga0213858_10462289	Not Available	590	Open in IMG/M
3300021497\|Ga0193945_1047310	All Organisms → Viruses	549	Open in IMG/M
3300021958\|Ga0222718_10090900	Not Available	1818	Open in IMG/M
3300021958\|Ga0222718_10163384	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1246	Open in IMG/M
3300021958\|Ga0222718_10201223	All Organisms → Viruses	1087	Open in IMG/M
3300021958\|Ga0222718_10302859	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	829	Open in IMG/M
3300021958\|Ga0222718_10628450	Not Available	500	Open in IMG/M
3300021959\|Ga0222716_10089391	All Organisms → Viruses → Predicted Viral	2100	Open in IMG/M
3300021960\|Ga0222715_10308003	All Organisms → Viruses	897	Open in IMG/M
3300021962\|Ga0222713_10623137	All Organisms → Viruses	626	Open in IMG/M
3300021964\|Ga0222719_10295391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)	1053	Open in IMG/M
3300022053\|Ga0212030_1057109	All Organisms → Viruses	555	Open in IMG/M
3300022057\|Ga0212025_1042677	Not Available	780	Open in IMG/M
3300022063\|Ga0212029_1044530	Not Available	639	Open in IMG/M
3300022068\|Ga0212021_1025763	All Organisms → Viruses → Predicted Viral	1126	Open in IMG/M
3300022071\|Ga0212028_1004212	All Organisms → Viruses	1956	Open in IMG/M
3300022167\|Ga0212020_1070275	Not Available	590	Open in IMG/M
3300022169\|Ga0196903_1007974	All Organisms → Viruses	1344	Open in IMG/M
3300022198\|Ga0196905_1133977	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C582	644	Open in IMG/M
3300022306\|Ga0224509_10259313	All Organisms → Viruses	628	Open in IMG/M
3300022308\|Ga0224504_10086687	All Organisms → Viruses	1264	Open in IMG/M
3300022925\|Ga0255773_10327550	All Organisms → Viruses → environmental samples → uncultured marine virus	613	Open in IMG/M
3300022926\|Ga0255753_1110456	All Organisms → Viruses	1323	Open in IMG/M
3300023170\|Ga0255761_10129150	Not Available	1529	Open in IMG/M
3300024433\|Ga0209986_10081633	Not Available	1803	Open in IMG/M
3300025655\|Ga0208795_1113146	Not Available	714	Open in IMG/M
3300025769\|Ga0208767_1196092	Not Available	683	Open in IMG/M
3300025771\|Ga0208427_1089533	Not Available	1077	Open in IMG/M
3300025803\|Ga0208425_1013564	All Organisms → Viruses	2228	Open in IMG/M
3300025803\|Ga0208425_1050818	All Organisms → Viruses	1033	Open in IMG/M
3300025822\|Ga0209714_1081535	Not Available	941	Open in IMG/M
3300025828\|Ga0208547_1121971	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	774	Open in IMG/M
3300025879\|Ga0209555_10311135	Not Available	600	Open in IMG/M
3300025889\|Ga0208644_1017584	Not Available	4608	Open in IMG/M
3300025889\|Ga0208644_1101577	Not Available	1414	Open in IMG/M
3300026183\|Ga0209932_1075073	All Organisms → Viruses	777	Open in IMG/M
3300026187\|Ga0209929_1096780	Not Available	771	Open in IMG/M
3300026187\|Ga0209929_1132389	All Organisms → Viruses	622	Open in IMG/M
3300031578\|Ga0307376_10322132	All Organisms → Viruses	1028	Open in IMG/M
3300032257\|Ga0316205_10069715	Not Available	1578	Open in IMG/M
3300032274\|Ga0316203_1210298	Not Available	535	Open in IMG/M
3300034375\|Ga0348336_012142	Not Available	5053	Open in IMG/M
3300034375\|Ga0348336_046828	Not Available	1824	Open in IMG/M
3300034375\|Ga0348336_174934	Not Available	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.22%
Terrestrial	Environmental → Terrestrial	0.78%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	78.12%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	17.97%
Freshwater	Environmental → Aquatic → Freshwater	2.34%
Sediment	Environmental → Aquatic → Sediment	0.78%
Soil	Environmental → Terrestrial → Soil	0.78%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	50.00%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	14.84%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified	8.59%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	3.12%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.34%
River	Environmental → Aquatic → Freshwater → River	1.56%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.56%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.56%
Sediment	Environmental → Aquatic → Marine → Sediment	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.78%
Clay	Environmental → Terrestrial → Soil → Clay	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	47.66%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	10.16%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	10.16%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	8.59%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	3.12%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.34%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	2.34%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	2.34%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	2.34%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	39.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	10.16%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	7.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.03%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	6.25%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	3.12%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.34%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	2.34%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	2.34%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.56%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	1.56%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.56%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.56%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.56%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.56%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.56%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.56%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.78%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment	0.78%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.78%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300001963	Marine microbial communities from Nags Head, North Carolina, USA - GS013	Environmental	Open in IMG/M
3300005215	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005611	Saline surface water microbial communities from Etoliko Lagoon, Greece	Environmental	Open in IMG/M
3300005733	Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14	Environmental	Open in IMG/M
3300005748	Seawater microbial communities from Vineyard Sound, MA, USA - control T7	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006402	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007609	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009423	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423	Environmental	Open in IMG/M
3300009515	Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010318	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental	Open in IMG/M
3300016735	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071406BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017971	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG	Environmental	Open in IMG/M
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental	Open in IMG/M
3300018041	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021497	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_0-1_MG	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022057	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022071	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)	Environmental	Open in IMG/M
3300022167	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)	Environmental	Open in IMG/M
3300022169	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022306	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24	Environmental	Open in IMG/M
3300022308	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300022926	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025822	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)	Environmental	Open in IMG/M
3300025828	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025879	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026183	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300032257	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrite	Environmental	Open in IMG/M
3300032274	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_101083391	3300000117	Marine	RVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
DelMOWin2010_101809713	3300000117	Marine	NIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
JGI11705J14877_101742163	3300001419	Saline Water And Sediment	RVDGMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH*
JGI11705J14877_101772511	3300001419	Saline Water And Sediment	NNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH*
JGI11705J14877_101896873	3300001419	Saline Water And Sediment	IRVDGMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGDH*
GOS2229_10039094	3300001963	Marine	MNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0069001_101429833	3300005215	Natural And Restored Wetlands	MNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0074648_100791514	3300005512	Saline Water And Sediment	RVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNSH*
Ga0074648_10709731	3300005512	Saline Water And Sediment	GMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0074648_11197352	3300005512	Saline Water And Sediment	MNNKVNINRLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0074647_10087141	3300005611	Saline Water And Sediment	GMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0076921_1372441	3300005733	Marine	GLEKLTLRVDGMMNNKVNINRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0076925_10367863	3300005748	Marine	EGLEKLTLRVDGMMNNKVNINRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075474_101311764	3300006025	Aqueous	VDGMMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0075478_100735161	3300006026	Aqueous	KVNIERLQKDFERLYIDVEKLKDSVRSNIGKLNGDH*
Ga0075462_101060655	3300006027	Aqueous	DGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0075462_101118021	3300006027	Aqueous	EQNMTNKVNIERLQSDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0075462_101240594	3300006027	Aqueous	GMMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0075462_102588182	3300006027	Aqueous	MNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075503_10052731	3300006400	Aqueous	NKVNIERLQSDVERLRIDVEKLKDSVRANLGKLNGNH*
Ga0075511_17821531	3300006402	Aqueous	RVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0075461_100577631	3300006637	Aqueous	EGLEKLTIRVDDMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075461_100952231	3300006637	Aqueous	MMNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH*
Ga0070749_107643861	3300006802	Aqueous	DGMMNYRVIIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0070749_107850221	3300006802	Aqueous	NIERLQTDVERLRIDVEKLKDSVRANLGKLNGNSH*
Ga0070754_101546391	3300006810	Aqueous	VDGMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH*
Ga0070754_103149031	3300006810	Aqueous	VNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075476_101405515	3300006867	Aqueous	MMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0070750_103051971	3300006916	Aqueous	MTNKVNIERLQQDVERLRIDVEKLKDSVRANIGKLNGTH*
Ga0070750_104892511	3300006916	Aqueous	LTIRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0070746_104593573	3300006919	Aqueous	DMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075460_102815771	3300007234	Aqueous	RVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRTNIGKLNGNH*
Ga0075460_102858231	3300007234	Aqueous	MMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0075463_102145753	3300007236	Aqueous	GLEKLTIRVDDMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGTH*
Ga0070752_12521143	3300007345	Aqueous	LEKLTVRVDDMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0070752_13949453	3300007345	Aqueous	NKVNIERLQQDVERLRIDVEKLKDSVRANIGKLNGTH*
Ga0070753_12799561	3300007346	Aqueous	RVNIERLQTDVERLRIDVEKLKDSVRANLGKLNGNSH*
Ga0099851_11133971	3300007538	Aqueous	TVRVDGMMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0099851_11422501	3300007538	Aqueous	VNIERLQTDVERLRIDVEKLKDSVRANLGKLNGNSH*
Ga0099851_12366791	3300007538	Aqueous	MMNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGDH*
Ga0099849_12422743	3300007539	Aqueous	MNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH*
Ga0099849_12783711	3300007539	Aqueous	IRVDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGAH*
Ga0099846_13372943	3300007542	Aqueous	VRVDGMMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0102945_10803063	3300007609	Pond Water	KIERLKTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0102948_12569713	3300007623	Water	DGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0070751_11029954	3300007640	Aqueous	DGMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH*
Ga0102954_10654183	3300007778	Water	NRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGDH*
Ga0075480_105988143	3300008012	Aqueous	LEKLTVRVDGMMNNRVKIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH*
Ga0102960_10119501	3300009000	Pond Water	RVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0102960_12642231	3300009000	Pond Water	NIERIQKDIEKILSDVEKLKDSVRANLGKLNGDH*
Ga0102963_10631561	3300009001	Pond Water	VDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0102963_13120083	3300009001	Pond Water	MMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH*
Ga0102957_11197801	3300009027	Pond Water	NIDRLQQDVERLRIDVEKLKDSVRANIGKLNGDH*
Ga0102957_13211073	3300009027	Pond Water	TRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGSH*
Ga0115548_10900011	3300009423	Pelagic Marine	RVDDMMKNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0129286_101918581	3300009515	Sediment	RVDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH*
Ga0114919_109112052	3300009529	Deep Subsurface	MKNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGDH*
Ga0114919_111816391	3300009529	Deep Subsurface	RVDGMMNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH*
Ga0129348_10453154	3300010296	Freshwater To Marine Saline Gradient	IRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0129345_11317101	3300010297	Freshwater To Marine Saline Gradient	RVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0129345_12656203	3300010297	Freshwater To Marine Saline Gradient	KAGATVTIRVDDMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH*
Ga0129342_13243531	3300010299	Freshwater To Marine Saline Gradient	MIKNRINNERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0129351_13077173	3300010300	Freshwater To Marine Saline Gradient	VNIERLQSDVERLRIDVEKLKDSVRANIGKLNGDH*
Ga0129351_13357013	3300010300	Freshwater To Marine Saline Gradient	VDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH*
Ga0136656_13209493	3300010318	Freshwater To Marine Saline Gradient	MNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH*
Ga0129324_102938791	3300010368	Freshwater To Marine Saline Gradient	KVNIDRLQTDVERLRIDVEKLKDSVRANLGKLNGNH*
Ga0118733_1092234591	3300010430	Marine Sediment	NKVNIERLQQDVERLRIDTEKLKDSVRTNIGKLNGDK*
Ga0182074_15761561	3300016735	Salt Marsh	NMTNKVNIERLQKDVDKILVDVEKLKDSVRANLGKLNGDH
Ga0182082_13549611	3300016771	Salt Marsh	VNINRLQQDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0181607_100125411	3300017950	Salt Marsh	KVNIERLQLDVERLRIDVEKLKDSVRANLGKLNGNH
Ga0181589_100944375	3300017964	Salt Marsh	MKNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0181589_104476252	3300017964	Salt Marsh	MMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0180438_105863221	3300017971	Hypersaline Lake Sediment	TIRVDDMMNNKVNINRLQMDVERLRVDTEKLKDSVRANIGKLNGNH
Ga0180434_105102351	3300017991	Hypersaline Lake Sediment	IRVDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNSH
Ga0181601_107131351	3300018041	Salt Marsh	RVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0180433_107237401	3300018080	Hypersaline Lake Sediment	TVRVDGMMNNRVNIERLQMDVNKLQIDVEKLKDSVRANIGKLNGNH
Ga0180433_110018643	3300018080	Hypersaline Lake Sediment	GMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0181563_101231991	3300018420	Salt Marsh	QEQNKTNKVNIERLQSDVERLRIDREKLKDSVRANIGKLNGSH
Ga0181592_101280351	3300018421	Salt Marsh	MMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0181592_107676481	3300018421	Salt Marsh	NKVNIERLQSDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0181592_108169463	3300018421	Salt Marsh	ERVDAMMNNKVNIDRLQTDVERLRIDVEKLKDSVRANLGKLNGNH
Ga0194029_10015711	3300019751	Freshwater	NNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0194024_10322494	3300019765	Freshwater	VNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0213858_103976851	3300021356	Seawater	VNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0213858_104622891	3300021356	Seawater	DMMNNKVNINRLQMDVERLRIDTEKLKDSVRTNIGKLNGNH
Ga0193945_10473101	3300021497	Sediment	MMNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH
Ga0222718_100909004	3300021958	Estuarine Water	MTNKVNIERLQQDVERLRVDVEKLKDSVRANIGKLNGDH
Ga0222718_101633841	3300021958	Estuarine Water	IRVDGMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH
Ga0222718_102012231	3300021958	Estuarine Water	KVNIERLQSDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0222718_103028591	3300021958	Estuarine Water	NNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0222718_106284501	3300021958	Estuarine Water	VDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGGH
Ga0222716_100893915	3300021959	Estuarine Water	QNMTNKVNIERLQLDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0222715_103080034	3300021960	Estuarine Water	VDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0222713_106231371	3300021962	Estuarine Water	TKRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0222719_102953911	3300021964	Estuarine Water	TIRVDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGTH
Ga0212030_10571091	3300022053	Aqueous	ESDGMMNNRVNIERLQKDVDRISIDVEKLKDSVRANIGKLNGAH
Ga0212025_10426774	3300022057	Aqueous	TERVDAMMNNKVNIDRLQNDVERLRIDVEKLKDSVRANLGKLNGNH
Ga0212029_10445302	3300022063	Aqueous	IRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0212021_10257634	3300022068	Aqueous	GQNMTNKVNILRLQSDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0212028_10042121	3300022071	Aqueous	RVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0212020_10702751	3300022167	Aqueous	DMMNNKVNIDRLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0196903_10079746	3300022169	Aqueous	MMNNRVNIERLQTDVERLRIDVEKLKDSVRANLGKLNGNSH
Ga0196905_11339773	3300022198	Aqueous	VNIERLQKDVDKILVDVEKLKDSVRANLGKLNGDH
Ga0224509_102593133	3300022306	Sediment	MMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0224504_100866877	3300022308	Sediment	LTIRVDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0255773_103275501	3300022925	Salt Marsh	VNIDRLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0255753_11104566	3300022926	Salt Marsh	KVNINRLQQDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0255761_101291501	3300023170	Salt Marsh	MMNNKVNINRLQTDVERLRIDVEKLKDSVRANIGKLNGNY
Ga0209986_100816335	3300024433	Deep Subsurface	NNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0208795_11131461	3300025655	Aqueous	NRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0208767_11960921	3300025769	Aqueous	DGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0208427_10895334	3300025771	Aqueous	VDGMMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0208425_10135641	3300025803	Aqueous	EQNMTNKVNIERLQSDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0208425_10508185	3300025803	Aqueous	TTRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0209714_10815353	3300025822	Pelagic Marine	MMNNRVNIERLQQDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0208547_11219713	3300025828	Aqueous	MNNKVNINRLQIDVERLRVDVEKLKDSVRANIGKLNGTH
Ga0209555_103111351	3300025879	Marine	MTNKVNIERLQQDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0208644_101758412	3300025889	Aqueous	KLTFRVDGMMNNRVNIERLQMDVGKLQVDVEKLKDSVRANIGKLNGNH
Ga0208644_11015771	3300025889	Aqueous	GMMNNRVNIERLQMDVERLRVDTEKLKDSVRANIGKLNGNH
Ga0209932_10750731	3300026183	Pond Water	RVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0209929_10967804	3300026187	Pond Water	LEKLTIRVDDMMNNKVNIDRLQQDVERLRIDTEKLKDSVRANIGKLNGDH
Ga0209929_11323891	3300026187	Pond Water	NRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGNH
Ga0307376_103221321	3300031578	Soil	KVNIERLQKDVDRISIDVEKLKDSVRANIGKLNGNSH
Ga0316205_100697155	3300032257	Microbial Mat	TRVDGMMNNRVNIERLQMDVERLRIDTEKLKDSVRTNIGKLNGDK
Ga0316203_12102981	3300032274	Microbial Mat	VNIERLQQDVERLRIDVEKLKDSVRANLGKLNGNH
Ga0348336_012142_4940_5053	3300034375	Aqueous	NKVNINRLQMDVERLRIDTEKLKDSVRANIGKLNGNH
Ga0348336_046828_1685_1807	3300034375	Aqueous	MMNNRVNIERLQTDVERLRIDVEKLKDSVRANIGKLNGDH
Ga0348336_174934_11_130	3300034375	Aqueous	MTNKVNIERLQSDVERLRIDVEKLKDSVRANIGKLNGDH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065231

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences