3300005665: Alkane-degrading methanogenic microbial communities from enrichment of sediment from a hydrocarbon-contaminated ditch in Bremen, Germany

Overview

Basic Information

• IMG/M Taxon OID: 3300005665
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114765 | Gp0115703 | Ga0074127
• Sample Name: Alkane-degrading methanogenic microbial communities from enrichment of sediment from a hydrocarbon-contaminated ditch in Bremen, Germany
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, San Diego
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50624176
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkane-Degrading Methanogenic Microbial Community From Enrichment
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Sediment → Alkane-Degrading Methanogenic Microbial Community From Enrichment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Bremen, Germany
• Coordinates
  • Lat. (^o): 53.079854
  • Long. (^o): 8.806667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F045728	Metagenome / Metatranscriptome	152	Y
F080090	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074127_101213	All Organisms → cellular organisms → Bacteria	5971
Ga0074127_101880	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	4217
Ga0074127_105481	Not Available	1649

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074127_101213	Ga0074127_1012134	F045728	MQLASAPREAYGQNERPSMAVQAAPAPAGDPLLVSRFLPTRE*
Ga0074127_101880	Ga0074127_1018805	F080090	MQQGDGWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISLAELEA
Ga0074127_105481	Ga0074127_1054811	F020363	MCLLPCVAVARVFALVVRCRVIQLLLYSRVGKNRDTKRESPGGAGAARTAGHLTFLFSQKILAVRKGNDIYRPVRPRFI