Metagenome / Metatranscriptome Family F086649

Basic Information
Family ID	F086649
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	60 residues
Representative Sequence	MPNPKMDALTKDSTDPQIQEAISAEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Number of Associated Samples	53
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	12.73 %
% of genes from short scaffolds (< 2000 bps)	71.82 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (57.273 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface (37.273 % of family members)
Environment Ontology (ENVO)	Unclassified (44.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (60.909 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1SMTZ23_100533294 2Ga0065179_10684123 3Ga0066635_102142072 4Ga0051981_102312921 5Ga0073583_11206091 6Ga0073583_112558933 7Ga0073583_11395308 8Ga0073583_11535794 9Ga0073582_1235654 10Ga0073582_1370924 11Ga0079367_11671232 12Ga0102944_100106510 13Ga0111032_10270474 14Ga0111031_10333333 15Ga0100403_10327262 16Ga0111034_10840103 17Ga0111034_12635232 18Ga0100377_13356992 19Ga0105152_100671532 20Ga0118735_100120152 21Ga0114921_108849842 22Ga0103680_100071159 23Ga0103680_100286673 24Ga0114925_1000002138 25Ga0114925_100225013 26Ga0114925_100945782 27Ga0114925_101158073 28Ga0114925_101534552 29Ga0114925_103551051 30Ga0114925_106277281 31Ga0114925_106569652 32Ga0114925_108439803 33Ga0114925_108820622 34Ga0114925_110018931 35Ga0114925_112805941 36Ga0114920_101894593 37Ga0114920_109121682 38Ga0114919_100154603 39Ga0114919_100300522 40Ga0114919_100628073 41Ga0114919_100871213 42Ga0114919_101604622 43Ga0114919_102673604 44Ga0114919_103957973 45Ga0114919_107605812 46Ga0114919_108294411 47Ga0136847_102827585 48Ga0153916_131813592 49Ga0172363_102213332 50Ga0172363_109854731 51Ga0180008_10955991 52Ga0180008_11205412 53Ga0180008_11624541 54Ga0180008_11801302 55Ga0180008_12005193 56Ga0180008_12178672 57Ga0180008_12280952 58Ga0180008_12333492 59Ga0180008_12368473 60Ga0180008_13805321 61Ga0180008_14167541 62Ga0180007_101295964 63Ga0180007_104185001 64Ga0180007_105876422 65Ga0180007_108079341 66Ga0180437_111479691 67Ga0180438_103365003 68Ga0172286_15101033 69Ga0180732_10939632 70Ga0180732_12662382 71Ga0212088_103332392 72Ga0209976_107520932 73Ga0209991_102463282 74Ga0209977_100000453 75Ga0209977_100651903 76Ga0209977_101116532 77Ga0209977_101459091 78Ga0209977_102151773 79Ga0209977_102713722 80Ga0209977_103318991 81Ga0209977_104666142 82Ga0209977_104855993 83Ga0209986_100336043 84Ga0209986_100539315 85Ga0209986_100689843 86Ga0209986_100858752 87Ga0209986_101037552 88Ga0209986_103014152 89Ga0210043_10068623 90Ga0209521_106630221 91Ga0209182_100599632 92Ga0209918_10482033 93Ga0209635_100269184 94Ga0307928_101508484 95Ga0307928_105121163 96Ga0315555_10397044 97Ga0307430_11729652 98Ga0307434_10011967 99Ga0307419_100687332 100Ga0307380_1000202616 101Ga0315542_10726853 102Ga0315547_12043982 103Ga0307377_101821821 104Ga0307377_111143142 105Ga0315274_115477232 106Ga0315274_118070291 107Ga0315296_102305992 108Ga0315546_10031594 109Ga0315289_101214973 110Ga0316630_118616162
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1SMTZ23_100533294 2Ga0066635_102142072 3Ga0051981_102312921 4Ga0073583_11206091 5Ga0079367_11671232 6Ga0114921_108849842 7Ga0103680_100071159 8Ga0103680_100286673 9Ga0114925_100945782 10Ga0114920_101894593 11Ga0114919_100871213 12Ga0114919_108294411 13Ga0136847_102827585 14Ga0180008_12005193 15Ga0180008_14167541 16Ga0180437_111479691 17Ga0172286_15101033 18Ga0212088_103332392 19Ga0209977_103318991 20Ga0307928_101508484 21Ga0315542_10726853 22Ga0315274_118070291 23Ga0316630_118616162
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1Ga0307380_1000202616 2Ga0065179_10684123 3Ga0066635_102142072 4Ga0073583_11206091 5Ga0073583_112558933 6Ga0073583_11395308 7Ga0073583_11535794 8Ga0073582_1235654 9Ga0073582_1370924 10Ga0079367_11671232 11Ga0102944_100106510 12Ga0111034_10840103 13Ga0111034_12635232 14Ga0105152_100671532 15Ga0118735_100120152 16Ga0114921_108849842 17Ga0103680_100071159 18Ga0103680_100286673 19Ga0114925_101158073 20Ga0114925_101534552 21Ga0114925_103551051 22Ga0114925_106277281 23Ga0114925_108820622 24Ga0114920_109121682 25Ga0114919_100628073 26Ga0114919_100871213 27Ga0114919_108294411 28Ga0136847_102827585 29Ga0153916_131813592 30Ga0172363_102213332 31Ga0172363_109854731 32Ga0180008_10955991 33Ga0180008_11205412 34Ga0180008_11624541 35Ga0180008_11801302 36Ga0180008_12005193 37Ga0180008_12178672 38Ga0180008_12280952 39Ga0180008_12333492 40Ga0180008_12368473 41Ga0180008_13805321 42Ga0180007_101295964 43Ga0180007_104185001 44Ga0180007_105876422 45Ga0180007_108079341 46Ga0180437_111479691 47Ga0172286_15101033 48Ga0180732_10939632 49Ga0212088_103332392 50Ga0209976_107520932 51Ga0209991_102463282 52Ga0209977_100000453 53Ga0209977_102151773 54Ga0209977_102713722 55Ga0209977_103318991 56Ga0209986_103014152 57Ga0209521_106630221 58Ga0209635_100269184 59Ga0307928_101508484 60Ga0307928_105121163 61Ga0315555_10397044 62Ga0307434_10011967 63Ga0307419_100687332 64Ga0315542_10726853 65Ga0315547_12043982 66Ga0307377_111143142 67Ga0315274_115477232 68Ga0315274_118070291 69Ga0315546_10031594 70Ga0315289_101214973 71Ga0316630_118616162
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 0.00% Coil/Unstructured: 59.09%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
a.60.16.1: GspK insert domain-like	d3ci0k2	3ci0	0.71341
f.1.2.1: Diphtheria toxin, middle domain	d1f0la3	1f0l	0.67336
d.92.1.5: Neurolysin-like	d1i1ip_	1i1i	0.66162
d.92.1.0: automated matches	d4iuwa_	4iuw	0.65929
e.45.1.1: Antivirulence factor	d1nh1a_	1nh1	0.64172

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF09723	Zn-ribbon_8	4.55
PF01555	N6_N4_Mtase	1.82
PF02037	SAP	1.82
PF01612	DNA_pol_A_exo1	0.91
PF02583	Trns_repr_metal	0.91
PF13385	Laminin_G_3	0.91
PF05048	NosD	0.91
PF00476	DNA_pol_A	0.91
PF14890	Intein_splicing	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	1.82
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	1.82
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	1.82
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.91
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	0.91

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	42.73 %
Unclassified	root	N/A	57.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	3.64 %
Unclassified	root	N/A	57.27 %
Viruses	superkingdom	All Organisms → Viruses	39.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Unclassified	root	N/A	57.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Unclassified	root	N/A	57.27 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Unclassified	root	N/A	57.27 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RBG_16_64_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_64_8	0.91 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Unclassified	root	N/A	57.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RBG_16_64_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_64_8	0.91 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Unclassified	root	N/A	57.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RBG_16_64_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_64_8	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	39.09 %
Unclassified	root	N/A	57.27 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.91 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013130\|Ga0172363_10221333	All Organisms → Viruses → Predicted Viral	1275	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10985473	Not Available	520	Open in IMG/M
3300002053\|SMTZ23_10053329	Not Available	5376	Open in IMG/M
3300004107\|Ga0065179_1068412	All Organisms → Viruses → Predicted Viral	1132	Open in IMG/M
3300004238\|Ga0066635_10214207	Not Available	898	Open in IMG/M
3300004265\|Ga0051981_10231292	Not Available	674	Open in IMG/M
3300005253\|Ga0073583_1120609	All Organisms → Viruses → Predicted Viral	4500	Open in IMG/M
3300005253\|Ga0073583_1125589	Not Available	29628	Open in IMG/M
3300005253\|Ga0073583_1139530	Not Available	43744	Open in IMG/M
3300005253\|Ga0073583_1153579	All Organisms → Viruses → Predicted Viral	3883	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.64%
Terrestrial	Environmental → Terrestrial	6.36%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	33.64%
Marine	Environmental → Aquatic → Marine	55.45%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.64%
Sediment	Environmental → Aquatic → Sediment	0.91%
Soil	Environmental → Terrestrial → Soil	6.36%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	2.73%
Coastal	Environmental → Aquatic → Marine → Coastal	4.55%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	20.91%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.82%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.27%
Lake	Environmental → Aquatic → Freshwater → Lake	9.09%
Oceanic	Environmental → Aquatic → Marine → Oceanic	43.64%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Chlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated	1.82%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	6.36%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	43.64%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.18%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	4.55%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	1.82%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	20.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	2.73%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	37.27%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	18.18%
Groundwater	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater	1.82%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	1.82%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	1.82%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	6.36%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	4.55%
Marine Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment	0.91%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.91%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	1.82%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.82%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.73%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	3.64%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.45%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.91%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002053	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ	Environmental	Open in IMG/M
3300004107	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (version 2)	Environmental	Open in IMG/M
3300004238	Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00	Environmental	Open in IMG/M
3300004265	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter	Environmental	Open in IMG/M
3300005253	Marine sediment microbial community near Loki's castle	Environmental	Open in IMG/M
3300005663	Marine sediment microbial community near Loki's castle	Environmental	Open in IMG/M
3300005782	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3	Environmental	Open in IMG/M
3300007533	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_D_shore_MG	Environmental	Open in IMG/M
3300007871	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2	Environmental	Open in IMG/M
3300007900	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1	Environmental	Open in IMG/M

Showing 1 to 10 of 53 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SMTZ23_100533294	3300002053	Marine Sediment	MPNSAMDNLTPDSTDQQIQEAISQEIEICMGQPAPEGAESKQKYCSGKAYGMAREKTGKSLDYGK*
Ga0065179_10684123	3300004107	Groundwater	MPNPAMDNLTSESTDQQVQDAISAEIELCMNQPPPPGAENQQKYCAGKAYGMAREKTGKELNLGK*
Ga0066635_102142072	3300004238	Groundwater	MPNPSMEKLTKDSTDAQIQEAISAEIEACMHEPGAESKACAGRAYGMAREKTGKELNYGQ
Ga0051981_102312921	3300004265	Groundwater	NLTSESTDQQVQDAISAEIELCMNQPPPPGAENQQKYCAGKAYGMAREKTGKELNLGK*
Ga0073583_11206091	3300005253	Marine Sediment	MPNPKMAALNKESSDKQIQEAISAEIQTCMGEPGAEQKACAGKAFDMARQATGKALDFGR
Ga0073583_112558933	3300005253	Marine Sediment	MPNPAMERLTKDSTDTQIQSAVSAEIEQCMKEPGADQKACAGRAFGMARDKTGKALDLGR
Ga0073583_11395308	3300005253	Marine Sediment	MPNPKMDALNNNSTDQQINEAVSAEIETCMSQPGADQKACAGKAFGMAREATGKELDLGR
Ga0073583_11535794	3300005253	Marine Sediment	MPNPKMDALNKTSSDKQIQEAISAEVQTCMSNEPGAEQKACASKAFGMARQATGKALDFGR*
Ga0073582_1235654	3300005663	Marine Sediment	MPNPKMEALNKTSSDKQIQEAISAEVQTCMGEPGAEQKACAGKAFGIARQKTGKALDLGR
Ga0073582_1370924	3300005663	Marine Sediment	MPNPKMQALNKNSTDPQIQEAISAEIEQCMSEPGAEQKACAGKAFGMARTATGKELNIGQ
Ga0079367_11671232	3300005782	Marine Sediment	MPNSAMENLTSSSTEQQVQEAISAEIELCMKKEGADQKACAGKAYGMARDKTGKSLDYGK
Ga0102944_100106510	3300007533	Pond Soil	MPNPAMDNLTKDSTDKQVQDAVSAEIELCMGQPAPPGAENKQKYCAGRAYGMARSKTGKELNYGT*
Ga0111032_10270474	3300007871	Marine Sediment	MENLTSSSTEQQVQEAISAEIELCMKKEGADQKACAGKAYGMARDKTGKSLDYGK*
Ga0111031_10333333	3300007900	Marine Sediment	MDNLTSSSTEQQVQEAISAEIELCMKKEGADQKACAGKAYGMARDKTGKSLDYGK*
Ga0100403_10327262	3300008255	Aquifer	MEKLTKDSTDAQIQEAISAEIEACMHEPGAESKACAGRAYGMAREKTGKELNYGQ*
Ga0111034_10840103	3300008517	Marine Sediment	MPNPKMEALTKDSSDAQIQEAISSEIQTCMHEPGAEQKACAGRAYGMARDKTGKALDYGR
Ga0111034_12635232	3300008517	Marine Sediment	MPNPKMEALNENSTDVQIQEAISAEIEQCMGEPGADQKACAGRAYGMAREKTGKALDYGR
Ga0100377_13356992	3300009004	Aquifer	MPNPAMDNLTSESTDQQVQDAISAEIELCMNQPPPPGAENQQKYCAGKAYGMAREK
Ga0105152_100671532	3300009039	Lake Sediment	MPNAAMDNLTSNSTDQQVQDAISAEIELCMNQPAPPGAEDQQKYCAGKAFGMAREKTGKELNPSR*
Ga0118735_100120152	3300009136	Marine Sediment	MPNPAMERLTSDSTDAQIQAAISAEISLCMDEPGADQKACAGRAYGMARDKTGKSLDYGK
Ga0114921_108849842	3300009150	Deep Subsurface	MPNPAMEKLTKDSSPEQIRDAISSEIQTCMREPGADQKAYAGRAYGMAREKTGKALDYGR
Ga0103680_100071159	3300009285	Groundwater	MPNKMMEGLTKDSTDQHIHEAISAEMEMCMKEPPPAGAESHQKYCAGKAYGMAREKTGKELNFGR*
Ga0103680_100286673	3300009285	Groundwater	MDKLTKDSSHQQIQDAIGSEMEMCMKEPGADQKACAGKAYGMAREATGKELNYGK*
Ga0114925_1000002138	3300009488	Deep Subsurface	MEALTKDSSDSQVQEAISSEIQICMKEPGADQKACAGRAYGMAREATGKELNYGQ*
Ga0114925_100225013	3300009488	Deep Subsurface	MPNPKMDALTKDSPEDQIQDAISAEIELCMGQPGAEQKACAGRAYGMAREATGKALDYGR
Ga0114925_100945782	3300009488	Deep Subsurface	MDALSKDSSDSQIQEAISEEIRLCMGQPGAEQKACAGRAYGMAREATGKALDYGR*
Ga0114925_101158073	3300009488	Deep Subsurface	MEALTKDSSDAQIQEAISEEIRLCMGKPGAEQKQCAAIAYSMARESTGKALDYGR*
Ga0114925_101534552	3300009488	Deep Subsurface	MPNPKMGALTKDSSPEQIRDAISSEIETCMHKPGADQKQCAAIAYSMAREATGKALDYGR
Ga0114925_103551051	3300009488	Deep Subsurface	MPNPKMDKLTKDSSDSQIQEAISSEIEYCMSNEPGADQKACAGRAYGMAREATGKELNYGQ*
Ga0114925_106277281	3300009488	Deep Subsurface	MPNPKMDALSKDSSDAQIQEAISEEIRLCMGQPGAEQKACAGRAYGMAREATGKALDYGR
Ga0114925_106569652	3300009488	Deep Subsurface	MPNPRMEKLTKDSSPEQIREAISSEIETCMGEPGADQKACAGRAYGMAREATGKALDYGR
Ga0114925_108439803	3300009488	Deep Subsurface	DMPNPKMDALSKDSSDAQIQEAISAEIETCMGEPGAEQKACAGRAYGMARDKTGKALDYGR*
Ga0114925_108820622	3300009488	Deep Subsurface	MPNPAMERLTKDSSDAQIQDAISAEIKACMGEAGAEQKACAGRAYGMAREATGKALDYGR
Ga0114925_110018931	3300009488	Deep Subsurface	MPNPAMERLTKDSSDAQIQDAIGAEIKACMGEPGAEQKACAGRAYGMARDATGKALDYGK
Ga0114925_112805941	3300009488	Deep Subsurface	MPNPKMEKLTKDSSDPQIQEAISAEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0114920_101894593	3300009528	Deep Subsurface	MPNPTMENLTSDSTDQQVQDAISKEIKLCMGEPAPPGAEDQQKYCAGKAYGMAREKTGKELNYK*
Ga0114920_109121682	3300009528	Deep Subsurface	MPNPKMEALTKDSSEQQIRDAISSEIETCMGEPGADQKACAGRAYGMAREATGKALDYGR
Ga0114919_100154603	3300009529	Deep Subsurface	MSALTKDSSPEQIREAISAEIEICMGEPGAEQRACAGKAYGMAREKTGKALDYGR*
Ga0114919_100300522	3300009529	Deep Subsurface	MPNPAMEALTPDSTDAQVQDAISAEIELCMKEPGADQKACAGRAYGMARDKTGKELNYK*
Ga0114919_100628073	3300009529	Deep Subsurface	MDNLTSASTEQQIQAAISAEIKLCMGQPAPEGAEDQQKYCAGKAYGMAREKTGKSLDYGK
Ga0114919_100871213	3300009529	Deep Subsurface	GCGQLLPSKEITMPNPKMSALTKDSSPEQIREAISAEIEICMREPGAEQKACAGRAYGMAREKTGKALDYGR*
Ga0114919_101604622	3300009529	Deep Subsurface	MEALTADSTDAQVQGAISAEIEICMKEPGADQKACAGRAYGMARDKTGKELNYGK*
Ga0114919_102673604	3300009529	Deep Subsurface	VGLTFLLPSKEKTMPNPKMEALTKDSSEEQIREAISAEIEACMHEPGAEQEACAGRAYGMAREATGKALDYGR*
Ga0114919_103957973	3300009529	Deep Subsurface	MPNPKMQALTKDSSPEQIREAISAEIETCMGEPGAEQKACAGRAYGMAREKTGKALDYGR
Ga0114919_107605812	3300009529	Deep Subsurface	MPNPKMDNLTKDSSPEQIREAISAEIEICMGEPGAEQKACAGKAYGMAREATGKALDYGR
Ga0114919_108294411	3300009529	Deep Subsurface	RERQRRKLMPNPKMEALSKDSSDDQIQDAISEEIRLCMDEPGADQKACAGRAYGMAREATGKALDYGR*
Ga0136847_102827585	3300010391	Freshwater Sediment	MMDKLDKDSSPMMIKDAISAEMEMCMKEPPPEGMKEDHQKYCAGKAYGMAREASGKTLDYGK*
Ga0153916_131813592	3300012964	Freshwater Wetlands	MPNSAMDNLTSSSTDQQIQDAISAEIELCMKEPGAEQKACAGRAYGMARDKTGKELNYGK
(restricted) Ga0172363_102213332	3300013130	Sediment	MPNPKMAALTKDSSHQQIQEAISAEIEICMKEGGKDQKACAGRAYGMARDKTGKSLDYGK
(restricted) Ga0172363_109854731	3300013130	Sediment	MMPNSAMDNLSPSSNDQQVQDAISKEIELCMSQPAPAGADDQQKYCAGKAYGMAREKTGKELNYGK*
Ga0180008_10955991	3300014613	Groundwater	MPNPKMDALNENSTDPQIQEAISSEIEMCMKEPGAEQKACAGKAYGMAREKTGKELNYGQ
Ga0180008_11205412	3300014613	Groundwater	MPNPKMEALTKDSSDMQIQDAISSEIETCMKEPGADQKACAGKAYGMARQATGKELNYGQ
Ga0180008_11624541	3300014613	Groundwater	NPAMDKLNKDSTDMQVQEAISAEIELCMREPGADQKACAGRAYGMARDKTGKELNYGQ*
Ga0180008_11801302	3300014613	Groundwater	MPNPKMDALTKDSTDPQIQDAISSEIEMCMKQPGAEQKACAGRAYGMARQATGKELNYGK
Ga0180008_12005193	3300014613	Groundwater	SKMDALTKDSTDPQIQEAISSEIEMCMKEPGADQKQCSAIAFSMAREATGKELNYGQ*
Ga0180008_12178672	3300014613	Groundwater	MPNPTMEALTSDSTDAQVQDAISAEIELCMKEPGADQKACAGRAYGMARDKTGKELNYGK
Ga0180008_12280952	3300014613	Groundwater	MEALSKDSTDPQIQEAISAEIEHCMGKPGADQKQCAAIAYSMAREQTGKALDYGR*
Ga0180008_12333492	3300014613	Groundwater	MPNPKMSALTKDSSDPQIQEAISAEIEHCMSKPGADQKQCAAIAYSMAREATGKELNYGQ
Ga0180008_12368473	3300014613	Groundwater	MPNSKMDALTKDSTDPQIQEAISAEIETCMGEPGAETKACAGRAYGIARQKTGKELNYGQ
Ga0180008_13805321	3300014613	Groundwater	MPNPKMDALNENSTDPQVQEAISAEIEACMHEPGADQKACAGKAYGMARQATGKELDYGR
Ga0180008_14167541	3300014613	Groundwater	ENSTDPQVQEAISAEIEACMHEPGADQKACAGKAYGMARQATGKELNYGR*
Ga0180007_101295964	3300014656	Groundwater	MDKLNKDSSDAQVQDAISEEIRLCMKEPGAEQKACAGRAYGMAREKTGKALDYGR*
Ga0180007_104185001	3300014656	Groundwater	MPNPKMDALNENSTDPQVQEAISAEMEACMGEPGAEQKQCAGMAYSMAREKTGKELNYGR
Ga0180007_105876422	3300014656	Groundwater	MPNPKMAALTKDSTDPQVQEAISSEIEMCMKEPGAESKACAGKAYGIAREKTGKELNYGK
Ga0180007_108079341	3300014656	Groundwater	MPNPKMDALTADSSPEQIREAISSEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0180437_111479691	3300017963	Hypersaline Lake Sediment	MPNPKMEALNSNSTEPQVQEAISAEIEHCMSKPGADQKQCAAMAHSMARERTGKELNYGQ
Ga0180438_103365003	3300017971	Hypersaline Lake Sediment	MPNPKMEALNSNSTEPQVQEAISAEIEHCMSKPGADQKQCAALAHSMARERTGKELNYGQ
Ga0172286_15101033	3300019252	Wetland	MPNPAMERLTKDSNDKDVQEAISAEIEHCMKKGGKTQKECAGMAYGMARQQTGKSLQSQT
Ga0180732_10939632	3300020171	Groundwater	MPNPAMERLTKDSSPEQIREAISSEIEACMQKPGAEQKQCAAIAYSMAREATGKALDYGR
Ga0180732_12662382	3300020171	Groundwater	DKLTKDSSPEQIREAISSEIETCMHEPGAEQKACAGRAYGMAREATGKALDYGK
Ga0212088_103332392	3300022555	Freshwater Lake Hypolimnion	MPNPAMDSLSEKSNQKDIQDAISVEIELCMQEKGADPKACAGKAYGMARERTGQQLQSQK
Ga0209976_107520932	3300024265	Deep Subsurface	MPNPAMEKLTKDSSESQIQEAISSEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0209991_102463282	3300024429	Deep Subsurface	MPNPTMENLTSDSTDQQVQDAISKEIKLCMGEPAPPGAEDQQKYCAGKAYGMAREKTGKELNYK
Ga0209977_100000453	3300024432	Deep Subsurface	MPNPKMEALTKDSSDSQVQEAISSEIQICMKEPGADQKACAGRAYGMAREATGKELNYGQ
Ga0209977_100651903	3300024432	Deep Subsurface	MPNPKMDALSKDSSDSQIQDAISEEIRLCMGQPGAEQKACAGRAYGMAREKTGKALDYGR
Ga0209977_101116532	3300024432	Deep Subsurface	MPNPKMDALSKDSSDSQIQEAISEEIRLCMGQPGAEQKACAGRAYGMAREATGKALDYGR
Ga0209977_101459091	3300024432	Deep Subsurface	MPNPKMDALNKDSSPEQIREAISSEIETCMGEPGADQKACAGRAYGMAREATGKALDYGR
Ga0209977_102151773	3300024432	Deep Subsurface	MPNPKMDALTKDSSEDQIQDAISAEIELCMGQPGAEQKACADRAYGMAREATGKALDYGR
Ga0209977_102713722	3300024432	Deep Subsurface	MPNIKMEKLTKDSSDIQVQEAISAEIETCMGEPGAEQKACAGRAYSMAREATGKALDYGR
Ga0209977_103318991	3300024432	Deep Subsurface	ATRESTRRKILMPNPKMEALTKDSSEDQIREAISAEMKLCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0209977_104666142	3300024432	Deep Subsurface	PAMERLTKDSSEAQIQDAISAEIKACMGEAGADQKACAGRAYGMAREATGKALDYGR
Ga0209977_104855993	3300024432	Deep Subsurface	MPNPRMEKLTKDSSDAQIQDAISSEIETCMGEAGAEQKACAGRAYGMAREATGKALDYGR
Ga0209986_100336043	3300024433	Deep Subsurface	MPNPAMEALTPDSTDAQVQDAISAEIELCMKEPGADQKACAGRAYGMARDKTGKELNYK
Ga0209986_100539315	3300024433	Deep Subsurface	MPNPKMEALTKDSSEEQIREAISAEIETCMREPGAEQKACAGRAYGMAREATGKALDYGR
Ga0209986_100689843	3300024433	Deep Subsurface	MPNPKMSALTKDSSPEQIREAISAEIEICMGEPGAEQRACAGKAYGMAREKTGKALDYGR
Ga0209986_100858752	3300024433	Deep Subsurface	MPNPKMQALTKDSSPEQIREAISAEMEICMGEPGAEQRACAGRAYGMARDKTGKALDYGR
Ga0209986_101037552	3300024433	Deep Subsurface	MPNPKMDALTKDSSDAQIQEAISSEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0209986_103014152	3300024433	Deep Subsurface	MPNPKMERLTRDSSPEQIREAISAEIEACMHEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0210043_10068623	3300025018	Aquifer	MPNPAMDNLTSESTDQQVQDAISAEIELCMNQPPPPGAENQQKYCAGKAYGMAREKTGKELNLGK
Ga0209521_106630221	3300025164	Soil	MPNSMMDNLGKDSTDQHIHEAISAEIEMCMKEPPPEGAENHQKYCAGKAYGMARGKTGKELNYGK
Ga0209182_100599632	3300025843	Lake Sediment	MPNAAMDNLTSNSTDQQVQDAISAEIELCMNQPAPPGAEDQQKYCAGKAFGMAREKTGKELNPSR
Ga0209918_10482033	3300026184	Pond Soil	MPNPAMDNLTKDSTDKQVQDAVSAEIELCMGQPAPPGAENKQKYCAGRAYGMARSKTGKELNYGT
Ga0209635_100269184	3300027888	Marine Sediment	MPNSAMDNLTPDSTDQQIQEAISQEIEICMGQPAPEGAESKQKYCSGKAYGMAREKTGKSLDYGK
Ga0307928_101508484	3300031227	Saline Water	MPNSKMDALNESSTDPQIQEAIASEIETCMRVPGADQKACAGKAYGMAREATGKELNYGR
Ga0307928_105121163	3300031227	Saline Water	MPNPKMDALNEKSTDSQIQEAISSEIELCMSQPGADQKACAGKAYGMARESTGKSLDYGK
Ga0315555_10397044	3300031257	Salt Marsh Sediment	MPNPAMDSLASESTDQQIQDAISKEIELCMSQPAPPGAEDQQKYCAGKAYGMARSKTGKELNYGT
Ga0307430_11729652	3300031337	Salt Marsh	MPNPAMDSLTSESTDQQIQDAISKEIELCMSQPAPPGAEDQQKYCAGKAYGMAKSKTGKELNYGT
Ga0307434_10011967	3300031379	Salt Marsh	MPNPAMDSLTKDSTDQQIQAAVSAEIELCMSQPAPPGAEDQQKYCAGKAYGMARSKTGKELNY
Ga0307419_100687332	3300031537	Salt Marsh	MPNSKMDALGADSTHDQIQDAISSEIEQCMKSGGDQKSCAGKAYGMAREATGKELDYGK
Ga0307380_1000202616	3300031539	Soil	MPNPKMDALTKDSTDPQIQEAISAEIETCMGEPGAEQKACAGRAYGMAREATGKALDYGR
Ga0315542_10726853	3300031552	Salt Marsh Sediment	MPNPKMDALNRNSTEPQIREAISSEIEACMNEPPPEGTDNQQKYCAGKAYGMAREKTGKELNGGR
Ga0315547_12043982	3300031553	Salt Marsh Sediment	MPNTAMDNLTKDSTDQQIQEAISAEIKLCMNQPAPEGAEDQQKYCSGKAYGMAREKTGKELNYGK
Ga0307377_101821821	3300031673	Soil	MPNPKMDALTKDSSDAQIQEAISEEIRLCMGEPGAEQKACAGKAYGMAREATGKALDYGG
Ga0307377_111143142	3300031673	Soil	MPNPKMDALTKDSSDSQVQEAISAEIEACMSEPGADQKACAGRAYGMAREATGKALDYGR
Ga0315274_115477232	3300031999	Sediment	MPNSAMDNLSSNSTDQQVQEAISVEIELCMKEPGAEQKACAGRAYGMARDKTGKELNSSK
Ga0315274_118070291	3300031999	Sediment	MPNPKMDALTKDSTDPQVQEAISAEIEHCMGKPGADQKQCAAMSYSMAREK
Ga0315296_102305992	3300032020	Sediment	MPNSAMDNLSSSSTDQQVQEAISAEIELCMKEPGAEQKACAGRAYGMARDKTGKELNSSK
Ga0315546_10031594	3300032029	Salt Marsh Sediment	MPNSAMENLTSESTDQQIQEAISREIELCMKEEGADQKACAGKAYGMARDKTGKALNYGK
Ga0315289_101214973	3300032046	Sediment	MPNSAMDNLSSASTEQQVQDAISAEIELCMNQPAPPGADSQQKYCAGRAYGIAREKTGKELNRGK
Ga0316630_118616162	3300033487	Soil	VPNSAMDSLTKDSSPQQMQDAISAEIELCMNQPAPEGATNQQKYCAGKAYGMAKERTGKELNPAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters