3300005072: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 soap2

Overview

Basic Information

• IMG/M Taxon OID: 3300005072
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149130 | Ga0070923
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 soap2
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 382726514
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001417	Metagenome / Metatranscriptome	699	Y
F001784	Metagenome / Metatranscriptome	635	Y
F003217	Metagenome / Metatranscriptome	500	Y
F018909	Metagenome / Metatranscriptome	232	Y
F021612	Metagenome / Metatranscriptome	218	Y
F026607	Metagenome / Metatranscriptome	197	Y
F029085	Metagenome / Metatranscriptome	189	N
F035663	Metagenome / Metatranscriptome	171	Y
F036417	Metagenome / Metatranscriptome	170	Y
F047639	Metagenome / Metatranscriptome	149	Y
F064906	Metagenome / Metatranscriptome	128	Y
F088752	Metagenome / Metatranscriptome	109	N
F091648	Metagenome / Metatranscriptome	107	Y
F098955	Metagenome / Metatranscriptome	103	Y
F102635	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0070923_1739175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	512
Ga0070923_1740064	Not Available	513
Ga0070923_1743949	All Organisms → cellular organisms → Bacteria → Proteobacteria	517
Ga0070923_1757186	Not Available	535
Ga0070923_1766763	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	549
Ga0070923_1775798	All Organisms → cellular organisms → Bacteria	563
Ga0070923_1799534	Not Available	609
Ga0070923_1800762	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	612
Ga0070923_1826129	Not Available	684
Ga0070923_1837658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	733
Ga0070923_1854596	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	842
Ga0070923_1858517	Not Available	880
Ga0070923_1867286	All Organisms → cellular organisms → Bacteria	998
Ga0070923_1883326	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2405
Ga0070923_1883369	All Organisms → cellular organisms → Bacteria → Proteobacteria	2441

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0070923_1739175	Ga0070923_17391751	F047639	SSTITYHLSSKFTPNFLINPDHIFIYNGYRTVIITDKSAETINPLDFESKFNAKDFETAIESKLIRDTFNTLKPKLFDMTTILLLLNLVMTFGVFYFLLKSQGVI*YERYKKR*
Ga0070923_1740064	Ga0070923_17400641	F029085	MKNVKDEKIKIDELLEENISEQLENGSSDLVSLIAISELTNLDKLKVITRIKDEQIPLLTKLYMFAETFNIPFVKNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRGLFGTKDVFR
Ga0070923_1743949	Ga0070923_17439491	F001417	FFLPVARAATLAGRPCEVQIVAMDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI*
Ga0070923_1757186	Ga0070923_17571861	F091648	FNTWTEEAYVSKLPKVLQRKHAVVSKKLNVLMSDIHQYLSTERRVGRPAGGLTKTSVRNKIRNATPEQLAAIAKILEQKPEPETEISPISANVETVEEVSENE*
Ga0070923_1766763	Ga0070923_17667632	F102635	LMRAKADCVYHILRQIVEDVPAVQITTRLPENLTEEQLCLMTNAIKEAALKGIEVAMTHSVQVVMSSIYDLCTSKLQQAYSS*
Ga0070923_1775798	Ga0070923_17757981	F003217	MSDTPYVVQKVEWFQFRSADGKAFFVMVSSLPNGFFTAVPCDLTMVRADHSLMAPAPSQDEALAQLQTTLAGKTRDDLFPNAG*
Ga0070923_1799534	Ga0070923_17995341	F088752	YKYKIRKENEKLKGLQNIYNQITKILKENKVIMNITPPRPYIIYEEDEERFNTEAEELLKKGKIKEYNTLMERKEKYKLYFDEAYKYTNFYD*
Ga0070923_1800762	Ga0070923_18007622	F021612	MSVSGADRTRKLLTVGVGTVLIVVMGAVLIAGFRLATQMNANVAALQTASMLQTYPAALAQHLTSLRDRLEARAYAGQALADLRTTV
Ga0070923_1826129	Ga0070923_18261292	F018909	MKWVKTAIGAVIAISVIPIIVETVTTLTGTGGALEGNVAGTLLDLSPLVFVAGVL
Ga0070923_1837658	Ga0070923_18376581	F064906	YTRELIELGYRDAMEARDELLAFMSGEKVPPAIATPTVAETSEAT*
Ga0070923_1854596	Ga0070923_18545962	F036417	MVLYKRIPTRRLIPTVLVRLATDDGEIAFRARWKHSPLELQRSILFRLRQGSALWFEDEWGRALCFKPECVWGAMVDGR*
Ga0070923_1858517	Ga0070923_18585171	F026607	VSTTAALAVALSASVALAGTYVTGPLPPEFGGGFIPPNPAVLKNVQKASKEGAKLAASVEKCYAKGAANYSKGKATGVDTCLNDPSKGVLPKFVAKINSIAAKAPGLPPCHDYAADGTLIATLVKGFNAQVYCQSPSGAFVDGTATF*
Ga0070923_1867286	Ga0070923_18672861	F098955	MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED*
Ga0070923_1883326	Ga0070923_18833263	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECGYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
Ga0070923_1883369	Ga0070923_18833691	F035663	VRPTPAQTPDVELTDIHHALTAVHETVGTLTFPRCDQEDVYELIRRVELEIAGPHPDMQLIGTFLNSIARSLRTQPEAREACLRIEDAIERAGLPSTWQAGI*