3300004766: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004766
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110155 | Gp0085341 | Ga0007747
• Sample Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178393647
• Sequencing Scaffolds: 34
• Novel Protein Genes: 43
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	13
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	5
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F000191	Metagenome / Metatranscriptome	1666	Y
F001219	Metagenome / Metatranscriptome	744	Y
F012351	Metagenome / Metatranscriptome	281	Y
F014935	Metagenome / Metatranscriptome	258	Y
F014988	Metagenome / Metatranscriptome	258	Y
F015606	Metagenome / Metatranscriptome	253	Y
F016325	Metagenome / Metatranscriptome	248	Y
F017318	Metagenome / Metatranscriptome	241	Y
F018726	Metagenome / Metatranscriptome	233	Y
F023110	Metagenome / Metatranscriptome	211	Y
F023359	Metagenome / Metatranscriptome	210	N
F023855	Metagenome / Metatranscriptome	208	Y
F034157	Metagenome / Metatranscriptome	175	N
F036693	Metagenome / Metatranscriptome	169	Y
F040070	Metagenome / Metatranscriptome	162	N
F044151	Metagenome / Metatranscriptome	155	Y
F046210	Metagenome / Metatranscriptome	151	N
F046763	Metagenome / Metatranscriptome	150	Y
F047562	Metagenome / Metatranscriptome	149	N
F054588	Metagenome / Metatranscriptome	139	Y
F060956	Metagenome / Metatranscriptome	132	Y
F061551	Metagenome / Metatranscriptome	131	N
F063389	Metagenome / Metatranscriptome	129	N
F066466	Metagenome / Metatranscriptome	126	N
F068878	Metagenome / Metatranscriptome	124	Y
F073598	Metagenome / Metatranscriptome	120	N
F080816	Metagenome / Metatranscriptome	114	Y
F082170	Metagenome / Metatranscriptome	113	N
F085212	Metagenome / Metatranscriptome	111	Y
F092159	Metagenome / Metatranscriptome	107	N
F100333	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007747_1000627	All Organisms → cellular organisms → Bacteria → Proteobacteria	576
Ga0007747_1012312	Not Available	666
Ga0007747_1018143	All Organisms → Viruses → environmental samples → uncultured virus	1005
Ga0007747_1031278	Not Available	607
Ga0007747_1047405	Not Available	588
Ga0007747_1047836	Not Available	600
Ga0007747_1058567	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	794
Ga0007747_1063537	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	810
Ga0007747_1064145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	665
Ga0007747_1089145	Not Available	518
Ga0007747_1314702	Not Available	706
Ga0007747_1335481	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	701
Ga0007747_1344904	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	585
Ga0007747_1377281	Not Available	605
Ga0007747_1402607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	898
Ga0007747_1427531	Not Available	569
Ga0007747_1449334	Not Available	509
Ga0007747_1479929	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	520
Ga0007747_1481963	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	655
Ga0007747_1486549	Not Available	726
Ga0007747_1489620	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	625
Ga0007747_1506541	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	749
Ga0007747_1529856	Not Available	550
Ga0007747_1535745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	899
Ga0007747_1541459	Not Available	516
Ga0007747_1544062	Not Available	611
Ga0007747_1544291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	702
Ga0007747_1549256	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	3637
Ga0007747_1557281	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	509
Ga0007747_1559529	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	653
Ga0007747_1559997	All Organisms → cellular organisms → Eukaryota	627
Ga0007747_1563317	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	818
Ga0007747_1563627	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	818
Ga0007747_1570297	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	725

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007747_1000098	Ga0007747_10000981	F000155	QQMKFAAALVATVAANRFDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0007747_1000627	Ga0007747_10006272	F082170	MLIALGHKSQIQTQQLRRAEDRKAFDYIFLFEPFEAPLTRGQAS*
Ga0007747_1009717	Ga0007747_10097171	F000191	GYTVGNLVNQHVRFIETGEKDPLMTYEKALFTQSRPGEIPPID*
Ga0007747_1009986	Ga0007747_10099861	F000191	VGNLVNQHVRFIESGEKDPLMTYEKALITQSRVREIPELD*
Ga0007747_1012312	Ga0007747_10123121	F061551	MSLELIFVLFTILSEGTERFVSGDTMAGQLQHWHGSSDKQGAWAVSWPLLLLFLFAANTG
Ga0007747_1016731	Ga0007747_10167312	F000191	SGYTVGNLVNQHVRFIESGEKDPLMTYEKALITQSQGQEIPDLD*
Ga0007747_1018143	Ga0007747_10181431	F017318	VEGLFDIACDGINPSVGIFNFSLNDLPNYTEFTGLFDLYKIERIEIEWYPEYTVLSDGGVTSPADNVQLNTAIDPAGQTPTAVSDILQYRTLHATGISKRHKRDFVPAILLDGIAPVSTYISTASPSTNWWGIVYGVGITGTAMDLRSRAKFYLSFAQSR*
Ga0007747_1024967	Ga0007747_10249672	F000191	SGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRRSDRPRAD*
Ga0007747_1025483	Ga0007747_10254832	F000191	SGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRTGEMPPID*
Ga0007747_1026201	Ga0007747_10262012	F000191	VGNLVNQHVRFIETGEKDPLMTYEKAFFTQSRAGEIPPID*
Ga0007747_1031278	Ga0007747_10312782	F044151	RLQVLRALYFLEPMLIELGLGTSVDERDRLASDEPNVDLTSPT*
Ga0007747_1032727	Ga0007747_10327272	F000191	SGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRAREIPELD*
Ga0007747_1047405	Ga0007747_10474051	F046210	IVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAGAALKSCNVNS*
Ga0007747_1047836	Ga0007747_10478361	F046210	IVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS*
Ga0007747_1058567	Ga0007747_10585671	F073598	MGTGGYILYQAQGNSENINIAIKESVPGCKGPGTKGKQPRSIIKVLKKKLSEKKDYLIVTAKRWAWKQPSLRESVIAHWSN*
Ga0007747_1063537	Ga0007747_10635372	F015606	MADMLTTDPFFALTHQVAGVREKVSDSVFENYKLQVAQTNDINNRAMQVALHDSTALSAIKQEVSNGTLQTMLAASRTDAAIGATASITQRIAMEQGEATRRLIVDLNTQNLNTALINTNTALTGLGVQYGGLGLAYGGAVSAYQSANSVSAVNALGSALASNGIINTGTLSGTTQTATPTTIR*
Ga0007747_1064145	Ga0007747_10641451	F015606	MADMLTTDPFFALTHQVAGVREKVSDSVFENYKLQVAQTNDINNRAMQVALHDASELSAIKQEVSNGTLQAMLAASRTDAAIGATASATQRTIFEQGELTRRLVQDLNTQNLNTALINTNTALSGLGGQYAGLGLAYGGAVSAYQSANSVSAVNALGSALASNGIINTGTLSGTTQTATPTTIR*
Ga0007747_1089145	Ga0007747_10891453	F036693	MKYNKCMKPKNLIAKDLRTPKYRMRVVESKVKYIRKDKHK
Ga0007747_1123350	Ga0007747_11233502	F014935	TISAVTTPLPRVSTGRNESTYTSSDGLIDLSASHAYGRRTRRVLRLDHSKITADPFIPAQNTSVSMSNYIVFDVPVVGYTNAEIKAVYTGFKSLYTATSDALIDKLLGGES*
Ga0007747_1314702	Ga0007747_13147022	F085212	MRALQETTSDWSHKVSNHIYYVNDNRTKLVAFYNVDTKTTKKFSKPLPFYTKYRTFKELK
Ga0007747_1335481	Ga0007747_13354812	F046763	ATDVDTNLRVFDLRAADLNRSEFSVAGLTKPAERLLTISHEVAKGGEERHLVRIDETVVDALLVPATVSVYIVIVRPANTAITNALVIENVNELVDFVIEGGSNANVTKILNSEV*
Ga0007747_1344904	Ga0007747_13449041	F092159	LMVWNVETGCDGPAAVAPQTTQLLQLGTGVPQQTTMLNWANLSERAQKIKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATAADY*
Ga0007747_1377281	Ga0007747_13772811	F001219	MENINQFMTFSATSFLTAGGLFDFDLTFVAETILFIILALVVTFVFLNPISQQLDARAEFFNYNLRKSTFLLTYGYEKLSECIGLLTEEVSEMNRQIKLTTYTNSNFEEEVLSVQKQNSKLLSKLKGDLSIKSAYLFSNVTSELISLTDKFFTKKFQS*
Ga0007747_1402607	Ga0007747_14026071	F016325	HMKISIDKVDQNNFIGFVNRLKVIDTFIYFKIKDGVIQASAYLPQRDAVKHHRVPVGQVFQLEEGAISTTKELKIAFFDASRLTDAFKQFEFGNVQAEIEFVENDEDFVATEFRIFNNELEIKLACSEPSLGYKDLTDSQIQAIFNIDAANYVFDMDYTATSKVRSLFGLDKEETFTITTNKDGVRMKGKTYNYLVTDGFEGENGKDVTLFKKYLALLDKEDYSANVMDNRVVLRSKDSETLLTIATCQTAE*
Ga0007747_1427531	Ga0007747_14275311	F063389	GWLQIVVIGLLILVLFGKLPNIIQDLKSAYLELSKKNEEKDK*
Ga0007747_1449334	Ga0007747_14493341	F068878	MTEKAKKWSDQTVAQLLSIVGNSSPVSVDRVEQAAEALGVTIRSVGAKLRQLDREVASMA
Ga0007747_1479929	Ga0007747_14799291	F023110	KMRNATKLIRFVKNGSMLDDAPWTWGSTGGWCHDMPEFFQGMPSGVYDNIWEDLDDSPVTWHITEPVDPTEYQNEWLGDVINIY*
Ga0007747_1481963	Ga0007747_14819631	F023359	GYFKTSQAFVVIVLVVSFVLTVLLTLFQLDRVRNWFIFSIGMSFTRIAIAILAALVFVSSVIAFLSFLGLPSGFTSEIPKCVDGPCRAFSDSIKLSDLIEVRAGLSYTLVETRTWGPVEGWFIVLGIIPISVVLLALVVLNKFPLPIDSEASSGEAL*
Ga0007747_1486549	Ga0007747_14865491	F023855	VIQYNGNLKTERYGEVRVVSLSSFFKLYQGFNFEGDQKYGSRETSESSLVSCRSKDDMAG
Ga0007747_1489620	Ga0007747_14896201	F018726	MLVDPVTVTAASPTPELVLAVTKQDGYGSERVDTGGAGYTVITNHTKPKGGGSKHYVQMTLGVNAVNPYTGLTQRRVASVSFTITRPDFGFTDVQIVALAKALTDYRDDSQVTTARLIQFQS*
Ga0007747_1506541	Ga0007747_15065411	F014988	MAFAPASPATGAVVTGLTSPTYTLLTDTAPNINGKQYAVSALGGTQTSVDVNSVSKPFTVAFFRPPILRTLPQANPVTGVIKNVPLNVYKYITRKGAAPASNQSIMVPKITTIIECPAGVDTYEP
Ga0007747_1529856	Ga0007747_15298561	F080816	IIEMKKIIMNLAVALVGLFGATSANATVYFQSDFNGLTPSTKVINGGLLSLTAYGVPDQYGIVRDNALTIYGGDQYNGAVSARLVGLGADLAAGKSLLRMTGEYRTKSAWDGAAFATTAKIEYQNNEWYFDYNKLVINTPTPDWTSFTLDLNLAGLATDAPHIDMINLNFYIGGNAPGEFQI
Ga0007747_1535745	Ga0007747_15357451	F047562	GPRSESSCATPDKTHPNRGVLANRATYLVLVKCLLVSSLLALTGCATNDPAPVAADDVIGDYDNACLPEAVMMAQALRRNGIKARVLIMSGDGWSHAVTAYQYPPEKGQIWCWDSDEQSVPVSARWTSSENLADAWMRACQRQDEIIQARFE*
Ga0007747_1541459	Ga0007747_15414591	F100333	KMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRVSASDSSLASSLYNYTQTNFDMFGQTVHVQSANTKIVRTTQQTYAQLGASNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAFLGLSDKIA
Ga0007747_1544062	Ga0007747_15440621	F034157	NPMNTHVHSASVGVQSFHINPWTFWLMLQVAFIVAVTMVTLWAMPHDPQSDRERLDIEHTIEERGLWQQLNARQCNLADESVQALQQQLSAYNLNGRSRVQAEINQLKLKLNEAQAMVDYAVLQGYPNGMIVREEITKVNFYKKKIAEQRWEDQSFSYDLIADPDMRNYAVQCASNDGLLSQARSALDDANVQHTQSQRQGTV
Ga0007747_1544291	Ga0007747_15442912	F054588	AAAFGLIGPALFLRNINLSDWGMLIGSSVLALWLLSPFVLIALAVRSDRFSAIGALIATILAGLFGAWFYTELTFHFYTRSDAQDAIAMLFVAAYQHAIIVLTLGLASFVGWLQARRK*
Ga0007747_1549256	Ga0007747_15492562	F060956	MNADLTFNTIVFKKSFDEKDGSERKSTARGINTPDQLIIQQQSYVDSSTKVPGTRYTARVDRVTLDANLQKIKTSCYFVFMVPSTAVTADVTDVTTSFKALVADASFMAAVLNGEK*
Ga0007747_1557281	Ga0007747_15572811	F012351	MFADLHHLHQFISLEQGGSVTAASWVGGTNAGEADIYFGAAHINADNVSESWLSDDQVSDMAAGVNGPVDRNEGMYNGYAAIKTYWSDTIVMDNLRGGDATGLATPGAQEVTSTADGVDGTGNTVHTYSGDSFY*
Ga0007747_1559529	Ga0007747_15595291	F015606	MADMLTTDPFFALTNQVAGVREKVSDSVFENYKLQVAQTNDINNRAMQVALHDASELASIKQEVSNGTLQAMLAAARTDAQIGATASVTQRTIFEQGELTRRLVQDLNTQNLNTALINTNTALTGLGVQYGGLGLAYGGAVSAYQSANSV
Ga0007747_1559997	Ga0007747_15599971	F040070	DDEPLMPEYLPASHSIQSDSASLPLVSRYSPGGQSRHVASDDEPLMTEYLPAAQSKQSESASLLGDARYVPGGQLVHVALDDDPLMTEYLPAAQSMHVASDDEPCSTEYLPAAQSKQSDSASLLPVWIYFPAGQLVHVVPDDEPLMTEYLPAAHAMQSDSASLPMVSRYVPGGQFRHVLLDDEPLMPEYLPASHSIQSDSASLPLVSR
Ga0007747_1563317	Ga0007747_15633171	F018726	MLPDPVTVAAASPTPSLVLTIVKQDGYGSERVDSGGNGYTVIIQHQKQKGGGDRHYVQMTQVVNAVDPYTGLTQKKTASVSFTIVRPSFGFTDAAMVALAKALTDFRDDSEVTTARLLQFQS*
Ga0007747_1563627	Ga0007747_15636271	F018726	MLPDPVSVAAASPTPALVFTIVKQNPNGYGSQRNDTGGNGYTVLTQHEQKKGGGSRHYVQMTQVVNAVDPYSGLTRPQTASVSFTIVRPAYGFTDAAIVALAKALTDYRDDSEVTTARLLQFQS*
Ga0007747_1570297	Ga0007747_15702971	F066466	MLAAGLVTKLSADALHSAWNWQGVHFINVNLYPGDGVKEGAKAGSMWDPESSLAFLRARLAEIGTAEPVVIAMHLDFSARSTWWDQPKRKAFYEAIKGHNIIALLHGHTHVITRLTFPEDKDYADFGGQGPRFDCFSAGAFKPDAKDGKPFPGPRYPCECYVFRIVDDVLVAAHYTAEPGGWNTSKHAPQLTFVKKIK*