3300004209: Groundwater microbial communities from aquifer - Crystal Geyser CG22_combo_CG10-13_8/21/14_all

Overview

Basic Information

• IMG/M Taxon OID: 3300004209
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111384 | Gp0110945 | Ga0066649
• Sample Name: Groundwater microbial communities from aquifer - Crystal Geyser CG22_combo_CG10-13_8/21/14_all
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1311645270
• Sequencing Scaffolds: 30
• Novel Protein Genes: 39
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Archaea	2
Not Available	16
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Riflebacteria → unclassified Candidatus Riflebacteria → Candidatus Riflebacteria bacterium	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000212	Metagenome / Metatranscriptome	1580	Y
F000449	Metagenome / Metatranscriptome	1126	Y
F002857	Metagenome / Metatranscriptome	525	Y
F003081	Metagenome / Metatranscriptome	508	Y
F006305	Metagenome / Metatranscriptome	376	Y
F006747	Metagenome / Metatranscriptome	365	Y
F008119	Metagenome / Metatranscriptome	338	Y
F008120	Metagenome / Metatranscriptome	338	Y
F009876	Metagenome	311	Y
F016244	Metagenome	248	Y
F016358	Metagenome	247	Y
F017598	Metagenome	239	N
F017599	Metagenome / Metatranscriptome	239	Y
F019952	Metagenome / Metatranscriptome	226	Y
F028419	Metagenome / Metatranscriptome	191	Y
F029019	Metagenome	189	Y
F030345	Metagenome	185	Y
F042051	Metagenome / Metatranscriptome	159	Y
F043249	Metagenome / Metatranscriptome	156	Y
F063344	Metagenome	129	Y
F065251	Metagenome / Metatranscriptome	128	Y
F067432	Metagenome / Metatranscriptome	125	Y
F071960	Metagenome	121	N
F074391	Metagenome	119	Y
F080881	Metagenome	114	N
F084884	Metagenome / Metatranscriptome	112	Y
F085143	Metagenome	111	Y
F091390	Metagenome	107	Y
F094905	Metagenome	105	N
F096625	Metagenome	104	N
F096627	Metagenome	104	N
F099485	Metagenome / Metatranscriptome	103	Y
F102531	Metagenome	101	N
F104465	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066649_10034703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2756
Ga0066649_10110403	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1498
Ga0066649_10141044	All Organisms → cellular organisms → Archaea	1309
Ga0066649_10208870	Not Available	1049
Ga0066649_10232837	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	985
Ga0066649_10316424	Not Available	821
Ga0066649_10353744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766
Ga0066649_10362516	All Organisms → cellular organisms → Bacteria → Proteobacteria	754
Ga0066649_10384781	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Riflebacteria → unclassified Candidatus Riflebacteria → Candidatus Riflebacteria bacterium	727
Ga0066649_10401086	Not Available	708
Ga0066649_10405289	All Organisms → cellular organisms → Archaea	703
Ga0066649_10409079	Not Available	699
Ga0066649_10413702	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	694
Ga0066649_10436388	Not Available	671
Ga0066649_10438541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	669
Ga0066649_10465951	Not Available	643
Ga0066649_10479656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23	631
Ga0066649_10498701	Not Available	615
Ga0066649_10505192	Not Available	610
Ga0066649_10509258	Not Available	607
Ga0066649_10522340	Not Available	597
Ga0066649_10523310	Not Available	596
Ga0066649_10523557	Not Available	596
Ga0066649_10541169	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	583
Ga0066649_10564711	Not Available	567
Ga0066649_10596279	Not Available	546
Ga0066649_10601455	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	543
Ga0066649_10605675	Not Available	541
Ga0066649_10645986	Not Available	518
Ga0066649_10679958	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066649_10034703	Ga0066649_100347032	F043249	MPKIVGTRERVHQPFYDSLIRVDGSGDLRQGNVGVFGAVQSRSQLFVRQGADVAVSNLTTGGFFPSDQTFVTLAVRVWTYFRFNVESQRTDAQNTTGPVASLAGVTADRIQRVHKLYHQAENQLFWQFIAGDKPQLTTFTAYTPAAGGLDGFFSDTRLPRANNGVPTSAALMRLARPILVPPRQGFQVVAIASPIGQAQGASIIEQLNGAVPNNDPWGASSTGGTVTGTGGTNGLTTTGRDDIEKDIKYLIDGIHSRDVL*
Ga0066649_10110403	Ga0066649_101104032	F099485	MNQKIIHNWQHSPSETQVASNPVKAVSKSLQQTKSLVFTNEDLMGLSWILFEERH*
Ga0066649_10141044	Ga0066649_101410443	F065251	MYLRHFTKGKKKYYYIAKAVRKGTSVIQKSILYIGTADTLYEKLISLKKK*
Ga0066649_10208870	Ga0066649_102088702	F063344	MKEPTYSEYQNIKKHKISIEYSVMFFTIGRCAFFRYFEDDGIEVSPIDRSCVLPMLSDEEIEKLSKFLDETKKEYNKYIF*
Ga0066649_10232837	Ga0066649_102328371	F084884	PTLGILARFQAFFYASAFSQSDGDPPPAPARVTQTVIGA*
Ga0066649_10311488	Ga0066649_103114881	F096627	MKQDAGVFQFDLSLAELYWLAGAFGIASLPLPSDAPSGLSPSQMEARQKNGHASLLTRGLIRPSPGFGWQVERLPAALLQWISSAPSLLRLERIPKDGAAQRIHLFTAGDQGLSLEMDDDTARFVIFQTRRLLQESAVRWLALPAGAKKSTTAHDLPQPITFLPTTWKDSQLASRILKEQGMNTKTAKSTLAWAVSLEWVTALSKVKLEGQRNVLANQFVLCGNAKSIWG
Ga0066649_10316424	Ga0066649_103164241	F006305	LLIFLLISSIKSDSVCTESTLVTELIQDIKDNGKLDCLRRPLNPPSDKIESEDDKKLRLEGAWDTDCAFEADYDWLKSLKETYGLKTGLVDVNGKPVENDFDDQADMCEIVRAVIAGGLLEGAKLDELSPSVVDGIDCPGEGELGQSEICAVSGGAASQRYAWYIFLNGISITATNKPKWELSPDSQKLLDARKDTSS*
Ga0066649_10336744	Ga0066649_103367443	F016358	MIIMQMTVIVNIAQASKSFAKQSPAIKYATLKMTTSKSDIFVLPEWFG*
Ga0066649_10337409	Ga0066649_103374091	F096625	FQYFGFPVHKTGFVTKTFQQSLRFLPLLPAQLSQVIPPLDFPPIGDSYGTNRSLDLCQQTESQLASALSERLSDIQFTIETVHSEQFFADLEKLSHSLHSDHCPEDLGEAALAHHRNLSLWHALIKLEIHTTPDEIKVQFTEWYQRCAAHSTAALASVFATTYLKNNQDKEPIFEEDGAYTFKLILPCTCLDEHLLDKMADHLKDSWIYNPSSETDEVSNPELIPLYLLWFYQIVHPGPHLEFSEYLHALSSPAFTPNHLRLS
Ga0066649_10353744	Ga0066649_103537441	F042051	FGEVSWNDDVFSGSEKKNSKDLFLRLDEGSNEMRLITQPFQYLVHKYKKEGDPGFGQKVNCSAVHGSCPLCAAGDKAKPRWLLGVISRKTGTYKILDVSFAVFSQVRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSAADQQIKDSVDFDDLKRRVTPPTPDMVQKRIDKINGVTGEAAEAAPTPSGKAAKAATKAAPAPVNMSEEEDESFPAYDGDQAK*
Ga0066649_10362516	Ga0066649_103625163	F006747	TEKTFMSNATLTSAKPPGNRTQLNKQLAQAKTLLRQMRETVEDIEDARTIERAKRANGNKPRIPWAQVKKELQLN*
Ga0066649_10384781	Ga0066649_103847812	F009876	MSAKFLGSASNSGRGILPRRSGWKPLPLFRWIPTEHFKAGIET*
Ga0066649_10401086	Ga0066649_104010861	F102531	IPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK*
Ga0066649_10405289	Ga0066649_104052891	F091390	MNTKSTKSTTIRINEPTKEKLETLDFVRKHTFDDILTELIDFYEKNKGKKTK*
Ga0066649_10407105	Ga0066649_104071051	F096625	RSLDLCQQTESQLASDLSELTSDLQFTIETVHSEQFFADLKRLSHSLHSDHCPKDLGESALAHHRNLSLWHALNKLEIHTTSDEIQAKFTEWYRSYSAHSTAKLAALFATTYLRTHQDKEPIFEEDGAYTFKLILPCTFLDEHLLEEMADHLKDSWIYNPSSETDEVSNPELLPLYLLWYYQTVHPGPHLEFSEYLHALSSPSFTPNHLRQSQHWFLHALPYPVLPCFESGEG
Ga0066649_10409079	Ga0066649_104090791	F071960	QNQGEAEFPEGFQERTGKTVLELLAMPLGEAIPLLKQGDGSPLSRLLPHRAFEGMLLMPRGADTICATCHEHGACRDWVIGAAEDVCLELDLVEPGEILSYIAAKVIEGDYDHNTSITQIAQEFRADVLITTEVCK*
Ga0066649_10413702	Ga0066649_104137021	F019952	MVQTVQSTRVYPGQSVILLEKPRVLRRILFSIRALTDLTMGHKSHISFDDPSFLTYYILDGPVQQLEAKGEGICQGNIWAHNASSVELLFVMTEILV*
Ga0066649_10432250	Ga0066649_104322501	F000212	DPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPQCPKPKCELVCENPNCAPKVECCPCAAGGARVAQPFPFFKEAEKNKDCCSCK*
Ga0066649_10436388	Ga0066649_104363881	F017598	VTKLLEPHSKIVGYFLGKDIIHTNRDDITNRLAAHIIKHSQTHWTPALDVLNTTVLGKGHNTRMVTLVVGNTDYQGVLDILTQQPMETLSFLDHRTKRQNINQFDKMLKYHDYIVSHSTAVRLENVHYLDTQALWAHLQPITNTSFCDIFAGRTQGTTYIQCFKEKEPEVATAIQSYLLANFSDSADRPIIGERGGGTVNSSSTGTRTYRGNHSGKSTGKETT
Ga0066649_10438541	Ga0066649_104385412	F074391	MVQTVRSVLIQPGHKLSILEKPLVLSRIFFGICAFAPQTSWYESQISLGGPIFSSYYVMGGPVNYFGARGEGIFQGDIWVRNVSAIDLLYSVTEILH*
Ga0066649_10465951	Ga0066649_104659511	F002857	MKNTKENTGVFKDDETTEMKASMKFLTDRNFVERISLRDGMKRKFTMVKDERTEIIGFDGNTKQGITYTVTENGNLRNFFTASMKCISMLSKFSKDDMFEIELRTKKVGNNIVSFYVVKKL*
Ga0066649_10479656	Ga0066649_104796562	F029019	MKNTEICSSEYIKSEVLYRKMLHKINLLEHQIFEVKKMTNIFWDIRLKKPELACWILEGDSVWWKTAADDISERWKEIDETKDEIDWAIRNMFVSVEREEEYKKKIKNNKKRTQ*
Ga0066649_10498701	Ga0066649_104987011	F080881	MSKNSKSAVALSELAVMPQFAAPVVEITPEVLSMIVMDIDPALIEAAELKEARLDEIRAKKDEAKRLIALYHEIAKTLNPLCDEYDSVEEERKLLKGVLEDALLASRITLANHPKVLENKAQIVKAAPNLMAEFNEKFNAAVIKQTQIAQADNIARMKALDASFAELDKKTAQLS
Ga0066649_10505192	Ga0066649_105051921	F008120	MKNTETSTSECIKAEALHQKILWQINLLGCQISECKKRFTFFYTQVQKKSDVSAGEKNENDISWVEAFNDFVENWEEMENVKDEVDWMIRDIFFAIEREEEEYNKKIKNNKKRTQ*
Ga0066649_10505192	Ga0066649_105051922	F104465	MVREKPDENEKTIKEYNARGERMYKNAINRENAKKTRKIK*
Ga0066649_10509258	Ga0066649_105092581	F102531	YGRQTNVIQPQKTVAGINQEIDKLVANGVDKLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK*
Ga0066649_10522340	Ga0066649_105223401	F030345	MELKNEKICIQTIEKRERENDSCWYAITDNQGKRFSCFEDEVAKKLQTNIVNLCKVKYSGKYANVMSVEGYEDNPKVADVNIERKREKNLESLRILKCVALKSAALCSGGQSVNSAEVLTKA
Ga0066649_10523310	Ga0066649_105233101	F085143	MARIDDGFATLIEFAEDSDVQMWEKEVTPPGVSGGGENDTSTMRNTTWRTKSPKGLMSLSEASLVVAYDPAVYNEIITMLNVNQQITITFADGSTLVFWGWIDEFTPGAAAEGSQPTATVKIIPSNQNGSGVETAPQYSAAP*
Ga0066649_10523557	Ga0066649_105235571	F008119	ENVYNMIFVCTEKTNKSITHLVRSVITIGVKRSSTDGTVYFDKINMNIGYINNAGNFTSVSDLDALHAFSTASETYVDLCLQEFVRIMSDYPLVNKRFAVKVNIFAHVDATTTSGQLGMYHTRGSADSYVEVELK*
Ga0066649_10541169	Ga0066649_105411692	F000449	MENKKAGEEDIPSPDFDQEFELRTSAPQEEMERYYARKKASLQRKIRQINKKIKKNIYNPYAGDDEKHKNVLE*
Ga0066649_10564711	Ga0066649_105647111	F000449	MKNKKAGEGISPSPDLDQEFELRTSAPQEEMERYYTRKKASLLRKIRKINKKIKKNIYNPYAGDDEKHKNRK*
Ga0066649_10564711	Ga0066649_105647112	F017599	MQATMKNTKIENEIKKRTPPGSKNIEKYRISTEYTSISYTTPHFLVFRYYCNSETYLCETRKSIVLWWISQAEKEKLLAFEKQKKEKHKGLKVFDGTTMEGL*
Ga0066649_10586203	Ga0066649_105862032	F094905	MNSLYGYIAVLIVVVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHREEMQNAEQNTIIATNSIAD
Ga0066649_10596279	Ga0066649_105962791	F028419	FASSIMSVHDINFNIMNDNMVTTRHYLSLNYWDLRNLGSPSNKFLLYEPIITKLSYLYQNNYMSDKFSLSSDPTGKVIITGGYNNMFHIIDADQKLNTQIIIDENNEKIMNTNVIRKINSKGSCFYKKDDPSLTNINFDKRILHQTYSPVENFCHLILLNCIYSYTGALAKKSK*
Ga0066649_10601455	Ga0066649_106014551	F003081	MREEMFEETRFGTEVFAMHVRGVDVIFVFSYLHILKKIHLKNYITS
Ga0066649_10605675	Ga0066649_106056752	F016244	MCIFPYLCFCNYNYKIFKNIIKINKMVLPILPGIIVLAGARILVSYGTHLLRFIVANPKILLGTATVATVADALKEHEKNEQIRNSILQDIYTQNPELAQKIVSAGGFSFHPVENIFQMAVSSAITGLIIYAIIQKI*
Ga0066649_10621776	Ga0066649_106217761	F067432	PHCVTHCQAPKPECEAVCEEPKCDWKCHKPACPKPKCELVCENPNCAPKVECCPCAAGAARVAQPFPMFKESATNKDCCSCK*
Ga0066649_10645986	Ga0066649_106459861	F002857	MENKKRIWGTTQMDEAYDEMIRMEKEKQNGSVFKNDEKNDKKEMEASMKFLSDKNFIERISLRDGMKRKFKLVKDEATEIIGFDGNKKQGITYTVTENGNLRSFFTTSLKCISMLSKLQKDDVFEIELRTKKVGDTLISYHVVKKL*
Ga0066649_10679958	Ga0066649_106799581	F008119	KEVVRKIYVFQQVTNPYVFEGNNTHLLMENPSPSNLINGSDFSTLNSFSNTDSLIVYDMVFVCTEKTDKSITHSVRGVITIGVKRNSGNGNVNFDKINMNIGYIESTGAFTPISNADATHAYSTTSQTYVGLCLQDFVGIVNDYSLAGKRFAVKVNIFAHVDSADT