3300004185: Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50

Overview

Basic Information

• IMG/M Taxon OID: 3300004185
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111384 | Gp0110938 | Ga0066642
• Sample Name: Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 601162568
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	12
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes communis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000212	Metagenome / Metatranscriptome	1580	Y
F000320	Metagenome / Metatranscriptome	1306	Y
F000449	Metagenome / Metatranscriptome	1126	Y
F001003	Metagenome / Metatranscriptome	808	Y
F002777	Metagenome	530	Y
F003622	Metagenome / Metatranscriptome	476	Y
F016112	Metagenome / Metatranscriptome	249	N
F016496	Metagenome / Metatranscriptome	246	N
F020302	Metagenome	224	Y
F026801	Metagenome	196	Y
F028419	Metagenome / Metatranscriptome	191	Y
F039475	Metagenome / Metatranscriptome	163	N
F048100	Metagenome	148	Y
F050470	Metagenome / Metatranscriptome	145	Y
F055778	Metagenome / Metatranscriptome	138	Y
F057106	Metagenome / Metatranscriptome	136	Y
F057887	Metagenome / Metatranscriptome	135	N
F065251	Metagenome / Metatranscriptome	128	Y
F078218	Metagenome	116	N
F085132	Metagenome	111	Y
F085143	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066642_10068339	All Organisms → cellular organisms → Archaea	1166
Ga0066642_10090271	Not Available	1004
Ga0066642_10101719	Not Available	939
Ga0066642_10132215	Not Available	811
Ga0066642_10134734	Not Available	803
Ga0066642_10143640	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	774
Ga0066642_10161719	All Organisms → cellular organisms → Bacteria	723
Ga0066642_10175907	Not Available	689
Ga0066642_10201521	Not Available	636
Ga0066642_10237976	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	576
Ga0066642_10242715	Not Available	569
Ga0066642_10257537	Not Available	549
Ga0066642_10263640	Not Available	541
Ga0066642_10271285	Not Available	531
Ga0066642_10274939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes communis	527
Ga0066642_10277352	Not Available	524
Ga0066642_10281650	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	519
Ga0066642_10293731	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066642_10068339	Ga0066642_100683391	F065251	MYLRAFKKGGKKYYYIAKAVRKGLRVIQKSILYIGTADTLYEK
Ga0066642_10090271	Ga0066642_100902712	F020302	MTNVRSFNKKPRGEPLLTHQVHCNVTPKDYTKAKTLKLSWNQLLNIGINSTDVLRNLRTKDIEIYNLKQRIEKLTARLQFYNNKKNALLQENCKLRCVILDKDVYYAKEEEEFSTFLFDYKFNHHKIYCEPEASGRDEESQPDK*
Ga0066642_10098029	Ga0066642_100980291	F000212	LRTETKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPQCEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPHCPKPKCELVCENPNCAPKVECCACAAGGARVSSPMPFFKEAEKDPNCCGCHKPLVI*
Ga0066642_10101719	Ga0066642_101017191	F016496	MEDKIKGRRHLFEKGNKYQLMGSAGLRYGGTTSIAKNKEKNLERLRCGWKPKTLICKDITISDDEEAFAVEFSKKVSEENDTYVDTVLVELAIAQILQVHRVYVYAKDKKISRDASRMIGTVLSTLREMNATKSARKVDNIKVTVNSDIMTLI
Ga0066642_10101719	Ga0066642_101017192	F016112	INDIVIHDILEQTDRKVRDMVYIYRRLTMQMNKIGTNKIRFDCNKIGDGNMDTSIDSTDISIYHKNEGVYELFAIEKLDILSNEITFQTDIGENYEMLVEYFEDNFHFLIDSLSDASSLLATAMCVRSLPLTPQKDINAKEYERRAKEIIARSSTSFI*
Ga0066642_10128075	Ga0066642_101280751	F048100	PQTIFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELVKIETENSDAERSKQMSWAEIRQKIQERMKKTLFR*
Ga0066642_10132215	Ga0066642_101322151	F055778	MLSSVDLPEPELPTIKTNSPCLIENETLSRALTLLSPCP*
Ga0066642_10134734	Ga0066642_101347342	F078218	MKNTEAVVGVLLTQSDKIKKNILDRALKKIEDMQEIANEIDGMNKELYIFIRKTRCPETIAKQERNTKKINVFLTSIRKKLDKISEGRGEIDEIIDTLYELSKIEAENSDVKEQGQIFWADIRREIQKKIKKPKIK*
Ga0066642_10143640	Ga0066642_101436401	F001003	MEKYKKFMQEYKKDFLLPHNLSPKEKDIFIYIFRLLRKKINIGIYPEVRNDEIIYSKSDMKSLISKGIILFQPYKRGWIITIHPTHITKNVECSWCGTKFNEKIYFRLKRMR
Ga0066642_10161719	Ga0066642_101617192	F050470	ARGARNLTGKIEKIEDRDALAQVRRQARRIVFKAFLAAIPLTLIVFVLP*
Ga0066642_10175907	Ga0066642_101759071	F085132	VKNYKSILIVGAIAVGLYFFLHSKKILPMTLAQKAAWHEKVSRRMAQMSTAEKIRALKAARKEKAAAEGT
Ga0066642_10201521	Ga0066642_102015212	F085143	MARIDDGFATLIEFAEDSDVQMWEKEVTPPGVSGGGENDTSTMRNTTWRTKAPKGLMSLSEASLVVAYDPAVYNEIIIMLNVNQQITITFADGSTLVFWGWIDEFTPGAAAEGSQPTATVKIIPSNQNGSGVETAPQYSVAP*
Ga0066642_10237976	Ga0066642_102379761	F002777	MENIKKNTGTNPNISMHTEIISGRIIRKINEIGHKTHALKKKQNAFYAEALEKSRRSTEFPGKDKLREMTDDKFEHEWKEIEEGKDEVDWLIHRLYLSIEGEEEKNK*
Ga0066642_10242715	Ga0066642_102427152	F057106	MVQTIKTIYLTPPQKTKVAEMPHTLHRIFFSIRVVVGVNSWYPSKISFDDPSFASFYLLAGTERYFEMWGEDIFQGDIWVKNEAT
Ga0066642_10257537	Ga0066642_102575371	F039475	IYTKDEDYNPLGSIQLEFFQVDNDGNETYIGKSISGDDGRIEVSKTTLGGEGARIVVRNAKRLSGEDIVQTSDGKYSTFIVSNDETIQKVEIVFQIKKKHNISINVTWK*
Ga0066642_10263640	Ga0066642_102636401	F057887	ISELEVTKDEYEGEEFWKNLLAATIAPNLSFSDIIYDDLKVYRDEEGNEYVFDDLGNLYLVSRPWNPTEPIIFLSIDTEKEYEYNTNTHSFVDKPIVYEAGLGVFKLFSKILKKLKITGSTARVASVLARIKNIRTGKKILYFNRKRGTWTAARDVSLMSLVYFGLSQGGKVATQTGSIA
Ga0066642_10271285	Ga0066642_102712851	F028419	PIITKLSYLYQNNYMSDKFSLASDPTGKIIITGGYNNMFHIIDCDQKLNTQIVIDENNEKIMNTNVIRKINSKGSCFYKKDDPSLTNINFDKRILHQAYSPVENFANLILLNCIYSYTGALAKKSK*
Ga0066642_10274939	Ga0066642_102749391	F003622	MYDIMKNYQDELEIIANDLLEQAVGDGFKPNYTNRDFMNAVIIFQTALMDKMYDNQDYDKMDFDDRLNMATSCGQELRKLIHTYTGLDTHKVEEFL*
Ga0066642_10277352	Ga0066642_102773521	F026801	KTYKLKKDVNDICGLILSKPGATMFVEGHKAELWKEASDDFSHRWKEIAAEKYEVECMVHLMYDLVLREEEKLKGKIVFNAKRRAMSMVK*
Ga0066642_10281650	Ga0066642_102816502	F001003	MEKFKKFKIENKDFVLPQNLSPKEKDIFIYIFRLLRQKINKGIYPELYNNEIIYFKSDMKNLISKGIILFVRYKKGWVITLNPIHITKNVECPWCGAKFNEKIYFR
Ga0066642_10293731	Ga0066642_102937311	F000320	MSRSKGGKVEVLCGEILRKIKDIGQKTYKLKKDVNDVCGIILRKPGGTFFFEGRKAELWEEASDDFFKQWKEIGAEKYEVECLVNLMYDLVLQEEVKR
Ga0066642_10293731	Ga0066642_102937312	F000449	MENKKAGEEDTSSPDIDQEFELHTSAPQEEMERYYARKKASLERKIRKINKKIKKNIYHPYISDDEKYKNVPQ*